Non-Coding RNA Search

Ss1.1-rlin09_o8.5

Sequence:


               
               TTTTTTTTTTTTTTTTTTTTTTCCAAAGTTTTATTGAAATATAGTTGATTTACAATGTTG
TGACAATTTCTACTGTACAACAAAGTGATTCAGTTATACATGTACACACATGGAATCCCT
TTAGAAATCTTTGACCCATCATAGAACAACACAGAATATTTATTGCTAATATGCTTTTTC
TTGGAGTGGGAGGGGTTGTTTTTGGTTGATCTACTTCAAGAGATACTGAAATAATATCCA
GAAGCAGTGTATCATGGCAAATAGAGAAGAATGGTTTACATCTGCAGCTCTCTGGCTCTG
GGGGTAATATAGGCAATTTACTGTCCTCAGAGCTGATTTACCATTGAGTACATGCTGACT
TTTGCATCATGTTTATCTCAGGATGCTAACTTCCCTTAGCATTACAACTTGGTCTGAATG
ATGCACTGACAGAAAGGAGAAGAGTTTGGGTGTTCAGTTTTACTGGTCTGCCTGAATGAT
TGCACTGAAGAAAATAGCAGTTATTCACAACTTGTTTTTCTGTATCCTGTAAGGTTATTT
AGAATTGTTAAAAGGTTATAGTCTCATTTTGAGGTTTTTTTTTTTTTCCTCTTAAAGCTA
TGAAGAAGGGGATTTTGAAAAAGCTGCTGAACTATACAAAAGGGCAATGGAAATAAAAGA
AGCAGAAACGTCACTCTTGGGTGGAAAAGCTCCTTCCCGACACTCATCAAGTGGAGACAC
CTTTAGCTTAAAAACCCATTCTCCTAATACTTTTCTTCATCAAGGACAAAGGTAATAGCA
GCAATTATAATTCATTGCAAGTGCACCTTAGGATAAAATAATTAAACATTTGGAACATTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTTTTTTTTTTTTTTTTTTCCAAAGTTTTATTGAAATATAGTTGATTTACAATGTTG
TGACAATTTCTACTGTACAACAAAGTGATTCAGTTATACATGTACACACATGGAATCCCT
TTAGAAATCTTTGACCCATCATAGAACAACACAGAATATTTATTGCTAATATGCTTTTTC
TTGGAGTGGGAGGGGTTGTTTTTGGTTGATCTACTTCAAGAGATACTGAAATAATATCCA
GAAGCAGTGTATCATGGCAAATAGAGAAGAATGGTTTACATCTGCAGCTCTCTGGCTCTG
GGGGTAATATAGGCAATTTACTGTCCTCAGAGCTGATTTACCATTGAGTACATGCTGACT
TTTGCATCATGTTTATCTCAGGATGCTAACTTCCCTTAGCATTACAACTTGGTCTGAATG
ATGCACTGACAGAAAGGAGAAGAGTTTGGGTGTTCAGTTTTACTGGTCTGCCTGAATGAT
TGCACTGAAGAAAATAGCAGTTATTCACAACTTGTTTTTCTGTATCCTGTAAGGTTATTT
AGAATTGTTAAAAGGTTATAGTCTCATTTTGAGGTTTTTTTTTTTTTCCTCTTAAAGCTA
TGAAGAAGGGGATTTTGAAAAAGCTGCTGAACTATACAAAAGGGCAATGGAAATAAAAGA
AGCAGAAACGTCACTCTTGGGTGGAAAAGCTCCTTCCCGACACTCATCAAGTGGAGACAC
CTTTAGCTTAAAAACCCATTCTCCTAATACTTTTCTTCATCAAGGACAAAGGTAATAGCA
GCAATTATAATTCATTGCAAGTGCACCTTAGGATAAAATAATTAAACATTTGGAACATTG

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

Help | Less info


               
               114-244, gnl|bosTau2|chr9 (59522067-59522198)
               

               
               114-244, gnl|Hg17|chr3 (133884213-133884085)
               

               
               114-244, gnl|Mm7|chr9 (103757420-103757544)
               


               
               506-839, gnl|bosTau2|chr9 (59522914-59523272)
               

               
               506-839, gnl|Hg17|chr3 (133883723-133883388)
               

               
               506-839, gnl|Mm7|chr9 (103758000-103758324)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               114-244, gnl|bosTau2|chr9 (59522067-59522198)
               

               
               114-244, gnl|Hg17|chr3 (133884213-133884085)
               

               
               114-244, gnl|Mm7|chr9 (103757420-103757544)
               


               
               506-839, gnl|bosTau2|chr9 (59522914-59523272)
               

               
               506-839, gnl|Hg17|chr3 (133883723-133883388)
               

               
               506-839, gnl|Mm7|chr9 (103758000-103758324)

Expressed library(ies): 22 entry(ies)

More info

Expressed library(ies): 22 entry(ies)

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               gul (0.532765)
               

               
               lin (0.436808)
               

               
               lyg (0.399308)
               

               
               spc (0.226732)
               

               
               nbm (0.198649)
               

               
               fcc (0.197785)
               

               
               aor (0.195274)
               

               
               cmu (0.186393)
               

               
               sag (0.182715)
               

               
               mgm (0.180343)
               

               
               ton (0.1755)
               

               
               mga (0.160205)
               

               
               fco (0.157208)
               

               
               ctl (0.153069)
               

               
               fat (0.147427)
               

               
               ski (0.146735)
               

               
               csk (0.140746)
               

               
               kid (0.129735)
               

               
               sug (0.127291)
               

               
               ese (0.126502)
               

               
               bla (0.124347)
               

               
               ecc (0.115035)

Expressed library(ies): 22 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               gul (0.532765)
               

               
               lin (0.436808)
               

               
               lyg (0.399308)
               

               
               spc (0.226732)
               

               
               nbm (0.198649)
               

               
               fcc (0.197785)
               

               
               aor (0.195274)
               

               
               cmu (0.186393)
               

               
               sag (0.182715)
               

               
               mgm (0.180343)
               

               
               ton (0.1755)
               

               
               mga (0.160205)
               

               
               fco (0.157208)
               

               
               ctl (0.153069)
               

               
               fat (0.147427)
               

               
               ski (0.146735)
               

               
               csk (0.140746)
               

               
               kid (0.129735)
               

               
               sug (0.127291)
               

               
               ese (0.126502)
               

               
               bla (0.124347)
               

               
               ecc (0.115035)

	114-244, gnl\|bosTau2\|chr9 (59522067-59522198)
	114-244, gnl\|Hg17\|chr3 (133884213-133884085)
	114-244, gnl\|Mm7\|chr9 (103757420-103757544)

	506-839, gnl\|bosTau2\|chr9 (59522914-59523272)
	506-839, gnl\|Hg17\|chr3 (133883723-133883388)
	506-839, gnl\|Mm7\|chr9 (103758000-103758324)

	gul (0.532765)
	lin (0.436808)
	lyg (0.399308)
	spc (0.226732)
	nbm (0.198649)
	fcc (0.197785)
	aor (0.195274)
	cmu (0.186393)
	sag (0.182715)
	mgm (0.180343)
	ton (0.1755)
	mga (0.160205)
	fco (0.157208)
	ctl (0.153069)
	fat (0.147427)
	ski (0.146735)
	csk (0.140746)
	kid (0.129735)
	sug (0.127291)
	ese (0.126502)
	bla (0.124347)
	ecc (0.115035)