Non-Coding RNA Search

Ss1.1-rlin12_i11.5

Sequence:


               
               CAGACATGGGTACACCGCAGAAGGATGTCATTATCAAGTCAGATGCACCTGACACCCTAT
TCCTGGAGAAGCATGCAGATTATATTGCATCCTATGGCTCAAAGAAAGATGATTACGAAT
ACTGTATGTCTGAATATCTGAGAATGAGTGGAATCTATTGGGGTCTGACCGTAATGGATC
TCATGGGACAACTACACCGTATGAATAGAGAAGAAATTTTGGCATTTATTAAGTCGTGTC
AACACGAGTGTGGTGGAATAAGTGCTAGCATTGGACATGATCCGCATCTTTTATATACTC
TTAGTGCTGTCCAGATCCTTACTCTTTATGATAGTATTAATGTTATTGATGTAAATAAAG
TTGTGGAATATGTTCAGAGTCTACAAAAAGAAGATGGTTCTTTTGCTGGAGATATTTGGG
GTGAAATTGATACAAGATTCTCTTTTTGTGCGGTGGCAACTTTGGCCCTATTGGGGAAGC
TGGATGCTATTAATGTGGAAAAAGCAATTGAATTTGTATTATCCTGTATGAACTTTGACG
GTGGATTTGGTTGCAGGCCAGGTTCTGAATCCCATGCTGGGCAGATCTATTGTTGCACAG
GATTCCTGGCTATTACTAGTCAGTTGCATCAAGTAAATTCTGATTTACTTGGTTGGTGGC
TTTGTGAACGACAGCTTCCATCAGGTGGACTCAATGGAAGGCCAGAGAAGTTACCAGATG
TATGCTATTCGTGGTGGGTGTTGGCTTCCCTTAAGATAATTGGAAGGCTTCATTGGATTG
ATAGAGAGAAACTGCGTAGTTTCATCTTGGCTTGTCAAGATGAAGAAACCGGAGGATTTG
CGGACAGGCCAGGAGATATGGTAGATCCTTTTCATACTCTATTTGGAATTGCTGGATTGT
CACTTTTGGGAGAAGAGCAGATTAAACCTGTTAATCCTGTTTTTTGCATGCCTGAAGAAG
TACTTCGGAGAGTGAATGTTCAACCTGAACTAGTAAGCTAGATTAGATCCTTCGATGCAA
AGGTCACTTGTAGTTTTGCCATCTTAATATTTTGGTATTTGAAGTGCTTAGCAAACTTAA
TGGCTATGATGTTAATATTTTGTACATGAATTGTGTTGATTTTAATAAATTATATGATTA
TACATACTGTAAATTAAAGACCTTTATTGTATCTGCAGCTGTCCATTTTCTTCTGGAATG
CTTTTATTCTGCATATATTTTGTTTATGTTTCAAGAAGTGTTATGTGTCTCTAAAAGCAA
ACTTAGTTGGATTCTTTAGCTGAAGTCTTGTGTTTGTACTCCCTTGTTATATATAACTAT
AGTTAATGTAAATTGGTCATTATCAATGAGAATGTTAACTGAACTCCATATGAATTAAAA
GATGAAAAAGATAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGACATGGGTACACCGCAGAAGGATGTCATTATCAAGTCAGATGCACCTGACACCCTAT
TCCTGGAGAAGCATGCAGATTATATTGCATCCTATGGCTCAAAGAAAGATGATTACGAAT
ACTGTATGTCTGAATATCTGAGAATGAGTGGAATCTATTGGGGTCTGACCGTAATGGATC
TCATGGGACAACTACACCGTATGAATAGAGAAGAAATTTTGGCATTTATTAAGTCGTGTC
AACACGAGTGTGGTGGAATAAGTGCTAGCATTGGACATGATCCGCATCTTTTATATACTC
TTAGTGCTGTCCAGATCCTTACTCTTTATGATAGTATTAATGTTATTGATGTAAATAAAG
TTGTGGAATATGTTCAGAGTCTACAAAAAGAAGATGGTTCTTTTGCTGGAGATATTTGGG
GTGAAATTGATACAAGATTCTCTTTTTGTGCGGTGGCAACTTTGGCCCTATTGGGGAAGC
TGGATGCTATTAATGTGGAAAAAGCAATTGAATTTGTATTATCCTGTATGAACTTTGACG
GTGGATTTGGTTGCAGGCCAGGTTCTGAATCCCATGCTGGGCAGATCTATTGTTGCACAG
GATTCCTGGCTATTACTAGTCAGTTGCATCAAGTAAATTCTGATTTACTTGGTTGGTGGC
TTTGTGAACGACAGCTTCCATCAGGTGGACTCAATGGAAGGCCAGAGAAGTTACCAGATG
TATGCTATTCGTGGTGGGTGTTGGCTTCCCTTAAGATAATTGGAAGGCTTCATTGGATTG
ATAGAGAGAAACTGCGTAGTTTCATCTTGGCTTGTCAAGATGAAGAAACCGGAGGATTTG
CGGACAGGCCAGGAGATATGGTAGATCCTTTTCATACTCTATTTGGAATTGCTGGATTGT
CACTTTTGGGAGAAGAGCAGATTAAACCTGTTAATCCTGTTTTTTGCATGCCTGAAGAAG
TACTTCGGAGAGTGAATGTTCAACCTGAACTAGTAAGCTAGATTAGATCCTTCGATGCAA
AGGTCACTTGTAGTTTTGCCATCTTAATATTTTGGTATTTGAAGTGCTTAGCAAACTTAA
TGGCTATGATGTTAATATTTTGTACATGAATTGTGTTGATTTTAATAAATTATATGATTA
TACATACTGTAAATTAAAGACCTTTATTGTATCTGCAGCTGTCCATTTTCTTCTGGAATG
CTTTTATTCTGCATATATTTTGTTTATGTTTCAAGAAGTGTTATGTGTCTCTAAAAGCAA
ACTTAGTTGGATTCTTTAGCTGAAGTCTTGTGTTTGTACTCCCTTGTTATATATAACTAT
AGTTAATGTAAATTGGTCATTATCAATGAGAATGTTAACTGAACTCCATATGAATTAAAA
GATGAAAAAGATAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|62751851|ref|NP_001015646.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|62751851|ref|NP_001015646.1|

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

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               3-325, gnl|bosTau2|chr19 (17110478-17110159)
               

               
               3-325, gnl|Hg17|chr1 (75965200-75967071)
               

               
               3-325, gnl|Mm7|chr3 (153822601-153821254)
               


               
               329-1294, gnl|bosTau2|chr19 (17109890-17108940)
               

               
               329-1294, gnl|Hg17|chr1 (75967672-75972635)
               

               
               329-1294, gnl|Mm7|chr3 (153820918-153818014)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-325, gnl|bosTau2|chr19 (17110478-17110159)
               

               
               3-325, gnl|Hg17|chr1 (75965200-75967071)
               

               
               3-325, gnl|Mm7|chr3 (153822601-153821254)
               


               
               329-1294, gnl|bosTau2|chr19 (17109890-17108940)
               

               
               329-1294, gnl|Hg17|chr1 (75967672-75972635)
               

               
               329-1294, gnl|Mm7|chr3 (153820918-153818014)

Expressed library(ies): 38 entry(ies)

More info

Expressed library(ies): 38 entry(ies)

Help | Less info


               
               tbr (0.925069)
               

               
               bfe (0.899146)
               

               
               kid (0.778412)
               

               
               mgp (0.692042)
               

               
               lin (0.582411)
               

               
               ova (0.516529)
               

               
               eye (0.511509)
               

               
               sug (0.509165)
               

               
               fco (0.471624)
               

               
               liv (0.438853)
               

               
               mas (0.42061)
               

               
               ldo (0.38801)
               

               
               sag (0.36543)
               

               
               gul (0.355177)
               

               
               fty (0.351679)
               

               
               ste (0.270416)
               

               
               thg (0.253582)
               

               
               tra (0.246184)
               

               
               hea (0.204499)
               

               
               jej (0.197844)
               

               
               eje (0.197668)
               

               
               col (0.195008)
               

               
               nlu (0.191681)
               

               
               nep (0.183925)
               

               
               ton (0.1755)
               

               
               sin (0.174948)
               

               
               lun (0.150489)
               

               
               isp (0.150376)
               

               
               ski (0.146735)
               

               
               spl (0.143184)
               

               
               hlv (0.139256)
               

               
               pla (0.133672)
               

               
               lyg (0.133103)
               

               
               bla (0.124347)
               

               
               ebs (0.118301)
               

               
               med (0.116252)
               

               
               ecc (0.115035)
               

               
               cbl (0.114797)

Expressed library(ies): 38 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tbr (0.925069)
               

               
               bfe (0.899146)
               

               
               kid (0.778412)
               

               
               mgp (0.692042)
               

               
               lin (0.582411)
               

               
               ova (0.516529)
               

               
               eye (0.511509)
               

               
               sug (0.509165)
               

               
               fco (0.471624)
               

               
               liv (0.438853)
               

               
               mas (0.42061)
               

               
               ldo (0.38801)
               

               
               sag (0.36543)
               

               
               gul (0.355177)
               

               
               fty (0.351679)
               

               
               ste (0.270416)
               

               
               thg (0.253582)
               

               
               tra (0.246184)
               

               
               hea (0.204499)
               

               
               jej (0.197844)
               

               
               eje (0.197668)
               

               
               col (0.195008)
               

               
               nlu (0.191681)
               

               
               nep (0.183925)
               

               
               ton (0.1755)
               

               
               sin (0.174948)
               

               
               lun (0.150489)
               

               
               isp (0.150376)
               

               
               ski (0.146735)
               

               
               spl (0.143184)
               

               
               hlv (0.139256)
               

               
               pla (0.133672)
               

               
               lyg (0.133103)
               

               
               bla (0.124347)
               

               
               ebs (0.118301)
               

               
               med (0.116252)
               

               
               ecc (0.115035)
               

               
               cbl (0.114797)

	3-325, gnl\|bosTau2\|chr19 (17110478-17110159)
	3-325, gnl\|Hg17\|chr1 (75965200-75967071)
	3-325, gnl\|Mm7\|chr3 (153822601-153821254)

	329-1294, gnl\|bosTau2\|chr19 (17109890-17108940)
	329-1294, gnl\|Hg17\|chr1 (75967672-75972635)
	329-1294, gnl\|Mm7\|chr3 (153820918-153818014)

	tbr (0.925069)
	bfe (0.899146)
	kid (0.778412)
	mgp (0.692042)
	lin (0.582411)
	ova (0.516529)
	eye (0.511509)
	sug (0.509165)
	fco (0.471624)
	liv (0.438853)
	mas (0.42061)
	ldo (0.38801)
	sag (0.36543)
	gul (0.355177)
	fty (0.351679)
	ste (0.270416)
	thg (0.253582)
	tra (0.246184)
	hea (0.204499)
	jej (0.197844)
	eje (0.197668)
	col (0.195008)
	nlu (0.191681)
	nep (0.183925)
	ton (0.1755)
	sin (0.174948)
	lun (0.150489)
	isp (0.150376)
	ski (0.146735)
	spl (0.143184)
	hlv (0.139256)
	pla (0.133672)
	lyg (0.133103)
	bla (0.124347)
	ebs (0.118301)
	med (0.116252)
	ecc (0.115035)
	cbl (0.114797)