Non-Coding RNA Search

Ss1.1-rlin12_i9.5

Sequence:


               
               TCCGCTTCGAATTCTTCGCAAGCGCAACAAAGCTTTGAAGAAAATCCGAAAACTGCAGAA
GAAAGGCCTGCTGCAAGTGACACCAAAAGGATTTATATGTACAGTTGATTGCGTTAAAGA
TTCTGATGAAGAACTGGACAATGATAAGATAGAAGAGCTAGATCAGCCGATCAACACCAC
AGACCTGCCCTTCCAGATAGACTGGAATGCTGATCTTCCTGTCAACATCGTGGTCCCTAA
AATCAGCCTGCATAGCCTCATTCTTGACTTTTCAGCAGTGTCATTTCTTGACGTTTCTTC
CATGAGAGGGCTCAAAACGATCTTGCAAGAATTTATTAGGATCCAGGTAGATGTGTATAT
CGTGGGAACTGATGATGATTTCATTGAGAAGCTTGGCCGGTGTGAATTTTTTGATGATGA
AGTCAAGGACTCAATATTTTTCTTAACAATCCATGATGCTGTTTTGCATATTTTGATGAA
GAAAGATTACAGTACTTCAAAGTTTAATCCCAGTCAGGAAAAAGGAGCAAAATATGATTT
CACCGTAAATACAAATGGAGGATTACGTAATCGGGAATGTCAGGTATCAGTTGAAACAAA
ATTCTAATCAAAATATAATCCAGAGGGATCCTCGCCTGACTGTCAAAGAACAACTTGATA
CCCAGAAAGTTATTGATAAGTTCATACATTGTATGAAGAGTATTTTTATTTGCCAGAAAT
TATGTTTCAAACTTTGGAACGAGATTGTTCTAACATGGTATATTTTTCACATATCTAGTA
TAAAATTATGTAAATAATCTTAATTTTGTATCTTGTAGATTTATCTAAGGACAATTATTT
TGTTTATATGTATTTTTATAGCACTGACAGATTTCACTACAGATTTCACTGCCTTCATGA
ATGTTTTGCAGTATATTTTTGCACCACTGCTTTGAATCTTGTAATTTATACAGTTCATAC
TAATATATACCCATTTTTTAAAAATTAATTGTACAGTGGGTGTGTCTTGTTTACTCTTAA
ATTTCTTATTAGCTCTGAAACGTGCTTGCTATGGATCTTCTTTATAGTGATCTGACTGGA
AACCTGATTCATGAGGATTTTCTAAACTCCTGGCAATGGGACTTCTTTGCCCAGATTTTA
TGATTATCACTGTTGCTTTTTAAAGCACTCACCCACTATCCAGATTTAGACACAATCCTC
CTAATGCCATATCTGTAACTTAAGTAGTTTTTGAAGCAAATCTTTATTCTTTCCCCCACC
TCTTTGTATGAAAATTGTATATGCTGATGGAAGATATAAAATGAAAAGCAAGGAAGTAAA
AAGCCAAGATAGTAGGAGAAAGTATGACTCCACTGCTGGTCGTTATTTGTAACTCACAGG
GAGACAGGCCTAGAGCTCAGTTTAGCTGGTGAATGGAGATTCGGCGCAGGTTTCTTTTTT
TTGCTGGCACTGCTCTTGGTGCAAATGTGCATTTATTTCATGTAATAGAAATTAAATATC
ATCACCAACAGAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCCGCTTCGAATTCTTCGCAAGCGCAACAAAGCTTTGAAGAAAATCCGAAAACTGCAGAA
GAAAGGCCTGCTGCAAGTGACACCAAAAGGATTTATATGTACAGTTGATTGCGTTAAAGA
TTCTGATGAAGAACTGGACAATGATAAGATAGAAGAGCTAGATCAGCCGATCAACACCAC
AGACCTGCCCTTCCAGATAGACTGGAATGCTGATCTTCCTGTCAACATCGTGGTCCCTAA
AATCAGCCTGCATAGCCTCATTCTTGACTTTTCAGCAGTGTCATTTCTTGACGTTTCTTC
CATGAGAGGGCTCAAAACGATCTTGCAAGAATTTATTAGGATCCAGGTAGATGTGTATAT
CGTGGGAACTGATGATGATTTCATTGAGAAGCTTGGCCGGTGTGAATTTTTTGATGATGA
AGTCAAGGACTCAATATTTTTCTTAACAATCCATGATGCTGTTTTGCATATTTTGATGAA
GAAAGATTACAGTACTTCAAAGTTTAATCCCAGTCAGGAAAAAGGAGCAAAATATGATTT
CACCGTAAATACAAATGGAGGATTACGTAATCGGGAATGTCAGGTATCAGTTGAAACAAA
ATTCTAATCAAAATATAATCCAGAGGGATCCTCGCCTGACTGTCAAAGAACAACTTGATA
CCCAGAAAGTTATTGATAAGTTCATACATTGTATGAAGAGTATTTTTATTTGCCAGAAAT
TATGTTTCAAACTTTGGAACGAGATTGTTCTAACATGGTATATTTTTCACATATCTAGTA
TAAAATTATGTAAATAATCTTAATTTTGTATCTTGTAGATTTATCTAAGGACAATTATTT
TGTTTATATGTATTTTTATAGCACTGACAGATTTCACTACAGATTTCACTGCCTTCATGA
ATGTTTTGCAGTATATTTTTGCACCACTGCTTTGAATCTTGTAATTTATACAGTTCATAC
TAATATATACCCATTTTTTAAAAATTAATTGTACAGTGGGTGTGTCTTGTTTACTCTTAA
ATTTCTTATTAGCTCTGAAACGTGCTTGCTATGGATCTTCTTTATAGTGATCTGACTGGA
AACCTGATTCATGAGGATTTTCTAAACTCCTGGCAATGGGACTTCTTTGCCCAGATTTTA
TGATTATCACTGTTGCTTTTTAAAGCACTCACCCACTATCCAGATTTAGACACAATCCTC
CTAATGCCATATCTGTAACTTAAGTAGTTTTTGAAGCAAATCTTTATTCTTTCCCCCACC
TCTTTGTATGAAAATTGTATATGCTGATGGAAGATATAAAATGAAAAGCAAGGAAGTAAA
AAGCCAAGATAGTAGGAGAAAGTATGACTCCACTGCTGGTCGTTATTTGTAACTCACAGG
GAGACAGGCCTAGAGCTCAGTTTAGCTGGTGAATGGAGATTCGGCGCAGGTTTCTTTTTT
TTGCTGGCACTGCTCTTGGTGCAAATGTGCATTTATTTCATGTAATAGAAATTAAATATC
ATCACCAACAGAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61824459|ref|XP_590450.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61824459|ref|XP_590450.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               853-966, - strand, RNAz p=0.59686

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               853-966, - strand, RNAz p=0.59686

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               86-319, gnl|bosTau2|chr4 (21122104-21121871)
               

               
               86-319, gnl|Hg17|chr7 (107008549-107008316)
               

               
               86-319, gnl|Mm7|chr12 (29306350-29306583)
               


               
               374-518, gnl|bosTau2|chr4 (21117756-21117612)
               

               
               374-518, gnl|Hg17|chr7 (107002305-107002161)
               

               
               374-518, gnl|Mm7|chr12 (29310792-29310936)
               


               
               581-1124, gnl|bosTau2|chr4 (21115790-21115259)
               

               
               581-1124, gnl|Hg17|chr7 (107000277-106999738)
               

               
               581-1124, gnl|Mm7|chr12 (29313422-29313885)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               86-319, gnl|bosTau2|chr4 (21122104-21121871)
               

               
               86-319, gnl|Hg17|chr7 (107008549-107008316)
               

               
               86-319, gnl|Mm7|chr12 (29306350-29306583)
               


               
               374-518, gnl|bosTau2|chr4 (21117756-21117612)
               

               
               374-518, gnl|Hg17|chr7 (107002305-107002161)
               

               
               374-518, gnl|Mm7|chr12 (29310792-29310936)
               


               
               581-1124, gnl|bosTau2|chr4 (21115790-21115259)
               

               
               581-1124, gnl|Hg17|chr7 (107000277-106999738)
               

               
               581-1124, gnl|Mm7|chr12 (29313422-29313885)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               lin (3.05766)
               

               
               rec (1.90377)
               

               
               col (0.780031)
               

               
               jej (0.395687)
               

               
               nje (0.33184)
               

               
               sin (0.174948)
               

               
               duo (0.172801)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lin (3.05766)
               

               
               rec (1.90377)
               

               
               col (0.780031)
               

               
               jej (0.395687)
               

               
               nje (0.33184)
               

               
               sin (0.174948)
               

               
               duo (0.172801)

	86-319, gnl\|bosTau2\|chr4 (21122104-21121871)
	86-319, gnl\|Hg17\|chr7 (107008549-107008316)
	86-319, gnl\|Mm7\|chr12 (29306350-29306583)

	374-518, gnl\|bosTau2\|chr4 (21117756-21117612)
	374-518, gnl\|Hg17\|chr7 (107002305-107002161)
	374-518, gnl\|Mm7\|chr12 (29310792-29310936)

	581-1124, gnl\|bosTau2\|chr4 (21115790-21115259)
	581-1124, gnl\|Hg17\|chr7 (107000277-106999738)
	581-1124, gnl\|Mm7\|chr12 (29313422-29313885)

	lin (3.05766)
	rec (1.90377)
	col (0.780031)
	jej (0.395687)
	nje (0.33184)
	sin (0.174948)
	duo (0.172801)