Non-Coding RNA Search

Ss1.1-rlin12_l19.5

Sequence:


               
               TATTTGTGATTGAGGATTAGAATTAGGAAATGAGTACTTCATCTCTCAACCTCTATCCTA
AGTGTAAGGACCTTTCTCATCCACTGTGAAAAAACTACAGTTACACTCAGCCTTTTAAAG
ATTCCCCTAGTTTTCAGCTTTTGATGCTATAACCACTATTCATTAACTGGCAAAATATTT
TACATTTGTATACTTGAGCAGAAGCAAAGAGTGACTACAAGGTAATTATTGCCCCTAATG
AAGCAAATTGGAATGAAATTAACTTAGCCAACCCCTTTGAATGGTAGAGTTAAAAAGTTG
TGGAATTCTGACATCAATGCCAGCTGGCAACTACAGATATTTATTGAGTACTTCCTACAT
ACCATGTACTGTGCTATTCTATTTATACGTTATCTCACTAATTTGACTGGTTGTATAATT
TTTAGAAAATCTTACCACCCCTACTTTTGACAAAACTCATCTTTGTAGATGGAAAGAGTC
TCAAAACCTTAAAATCTGACCATAAATGACTTCATGTAAAAGAAACTGTTTTTGAGCCTC
ACAGTGATAAAAAAAGACATGGTTTCAGCTCTCAGGGAACAGGTAGCTCAGTGGGGAAAC
AGATGGTAAACCTATAAACACTCAAGTAAATACATAATTATAACTTCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TATTTGTGATTGAGGATTAGAATTAGGAAATGAGTACTTCATCTCTCAACCTCTATCCTA
AGTGTAAGGACCTTTCTCATCCACTGTGAAAAAACTACAGTTACACTCAGCCTTTTAAAG
ATTCCCCTAGTTTTCAGCTTTTGATGCTATAACCACTATTCATTAACTGGCAAAATATTT
TACATTTGTATACTTGAGCAGAAGCAAAGAGTGACTACAAGGTAATTATTGCCCCTAATG
AAGCAAATTGGAATGAAATTAACTTAGCCAACCCCTTTGAATGGTAGAGTTAAAAAGTTG
TGGAATTCTGACATCAATGCCAGCTGGCAACTACAGATATTTATTGAGTACTTCCTACAT
ACCATGTACTGTGCTATTCTATTTATACGTTATCTCACTAATTTGACTGGTTGTATAATT
TTTAGAAAATCTTACCACCCCTACTTTTGACAAAACTCATCTTTGTAGATGGAAAGAGTC
TCAAAACCTTAAAATCTGACCATAAATGACTTCATGTAAAAGAAACTGTTTTTGAGCCTC
ACAGTGATAAAAAAAGACATGGTTTCAGCTCTCAGGGAACAGGTAGCTCAGTGGGGAAAC
AGATGGTAAACCTATAAACACTCAAGTAAATACATAATTATAACTTCT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               312-423, + strand, RNAz p=0.955377

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               312-423, + strand, RNAz p=0.955377

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               10-643, gnl|bosTau2|chr2 (10231364-10231994)
               

               
               10-643, gnl|Hg17|chr2 (143634512-143637227)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               10-643, gnl|bosTau2|chr2 (10231364-10231994)
               

               
               10-643, gnl|Hg17|chr2 (143634512-143637227)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               lin (0.145603)
               

               
               spl (0.143184)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lin (0.145603)
               

               
               spl (0.143184)

	10-643, gnl\|bosTau2\|chr2 (10231364-10231994)
	10-643, gnl\|Hg17\|chr2 (143634512-143637227)