Non-Coding RNA Search

Ss1.1-rlin12_p17.5

Sequence:


               
               CTAAATCTAAGTTTGATCAAATAGCAGTGACTAGATCCACTTCTAGTTTTTATTCCTCTG
TTTTTTGCGAGACTCTGATGCTGCAGTGAGTTACTTGGACTGTTAGTAAATTGTTATTTT
AATTCATAAAGTAATCCTATATAGGAATAAGATACTTATAGAATTGGGGGAGTCATTCTA
AACAATATTGTCATGATTTGGGAGATATTTAATCTTAAACTGCAAAAGATTTATAATCAC
AAATTGTCCTTCATACTTGCCTTTTTAAATAAAATTCTTAAGAATGATAGTTCCTAATGA
TAAGGGAAAATGTTATCTTTCTAAGGTAAAAAGAACAGCGGATAGTTGTACTAGCACACT
TAGATATACATAGTGACAAGCCCCCTATTGAGAATGAATAAATAAACAATTTTAAGTTTT
ACGTCATACGTTAAAAACTGTCTTTCTGTGGAGAAAGAGGGAAGGAGAAGTTGGTCTGCT
TATTTTACAAGTGAATTTTGAAAAACTTGGGTTGAATTTCTAGAGATTAAACATAAAAGT
ACAGATAAAATCCCAATGAAGTACAATGTGCAGGAGAGTCATGTTTTAAAGAATAATTTC
TCTTAGGTTTCCTTGAGGTATGTTCCTCCAGGGCAAACAAGGTGACGGTTTACAGAATTT
TCTTTACACAAAACATTTCAAGAACATACCCATTACATAAAAGCAAGGAATAACTAGTTC
ATGTTTTCCAAGAGTAAAGGTTCAAGGTTTATTCCTTTAATAGCTCTGTAATTATGTATT
TGGGGATTTTCCTAAGCTATTTATGTAATTTTATTTGAAGTAAATGTCTCAAATACTCCT
TTCCCAACCCAAACAGGGAGAATTCTGTTGATGTTGTGCTTGTATGATTATTAAACTTTA
TTTGCCTGATAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTAAATCTAAGTTTGATCAAATAGCAGTGACTAGATCCACTTCTAGTTTTTATTCCTCTG
TTTTTTGCGAGACTCTGATGCTGCAGTGAGTTACTTGGACTGTTAGTAAATTGTTATTTT
AATTCATAAAGTAATCCTATATAGGAATAAGATACTTATAGAATTGGGGGAGTCATTCTA
AACAATATTGTCATGATTTGGGAGATATTTAATCTTAAACTGCAAAAGATTTATAATCAC
AAATTGTCCTTCATACTTGCCTTTTTAAATAAAATTCTTAAGAATGATAGTTCCTAATGA
TAAGGGAAAATGTTATCTTTCTAAGGTAAAAAGAACAGCGGATAGTTGTACTAGCACACT
TAGATATACATAGTGACAAGCCCCCTATTGAGAATGAATAAATAAACAATTTTAAGTTTT
ACGTCATACGTTAAAAACTGTCTTTCTGTGGAGAAAGAGGGAAGGAGAAGTTGGTCTGCT
TATTTTACAAGTGAATTTTGAAAAACTTGGGTTGAATTTCTAGAGATTAAACATAAAAGT
ACAGATAAAATCCCAATGAAGTACAATGTGCAGGAGAGTCATGTTTTAAAGAATAATTTC
TCTTAGGTTTCCTTGAGGTATGTTCCTCCAGGGCAAACAAGGTGACGGTTTACAGAATTT
TCTTTACACAAAACATTTCAAGAACATACCCATTACATAAAAGCAAGGAATAACTAGTTC
ATGTTTTCCAAGAGTAAAGGTTCAAGGTTTATTCCTTTAATAGCTCTGTAATTATGTATT
TGGGGATTTTCCTAAGCTATTTATGTAATTTTATTTGAAGTAAATGTCTCAAATACTCCT
TTCCCAACCCAAACAGGGAGAATTCTGTTGATGTTGTGCTTGTATGATTATTAAACTTTA
TTTGCCTGATAC

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               8-274, gnl|bosTau2|chr10 (19274621-19274365)
               

               
               8-274, gnl|Hg17|chr15 (33059610-33059349)
               

               
               8-274, gnl|Mm7|chr2 (113935509-113935259)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               8-274, gnl|bosTau2|chr10 (19274621-19274365)
               

               
               8-274, gnl|Hg17|chr15 (33059610-33059349)
               

               
               8-274, gnl|Mm7|chr2 (113935509-113935259)

Expressed library(ies): 6 entry(ies)

More info

Expressed library(ies): 6 entry(ies)

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               nje (0.16592)
               

               
               lin (0.145603)
               

               
               spl (0.143184)
               

               
               kid (0.129735)
               

               
               ret (0.128733)
               

               
               tra (0.123092)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nje (0.16592)
               

               
               lin (0.145603)
               

               
               spl (0.143184)
               

               
               kid (0.129735)
               

               
               ret (0.128733)
               

               
               tra (0.123092)

	8-274, gnl\|bosTau2\|chr10 (19274621-19274365)
	8-274, gnl\|Hg17\|chr15 (33059610-33059349)
	8-274, gnl\|Mm7\|chr2 (113935509-113935259)

	nje (0.16592)
	lin (0.145603)
	spl (0.143184)
	kid (0.129735)
	ret (0.128733)
	tra (0.123092)