Non-Coding RNA Search

Ss1.1-rlin15_p23.5

Sequence:


               
               TACAGATGATAGTGAAAAAAAACCCCAGCGACGCAATCGTAGCCGCAGGCGTCGTTTCAG
GGGTCAGGCAGAAGATAGACAGCCAGGTAACTTGAGTGGACCTGTTGACAACACCAGGTC
ACAAGCATGAAAAAAATGTCATGTGTCTGCTTTCTAAATATATTATACTTACATGTACAC
ATGTGTGCATATACATTCAAGATGTGCATTGCATAAATTGTTTACTCAACTAATAAGACT
ACTATTCTTAAGAAAATGCATTCTTCCTTCACACCATAAATGTTTAGTAACCTGTCTAAT
TAAACTAATGTTGTGTCTCAATTTTTTACATGGAAATACTGTTGAGAAGACCATTATTTT
GGCCACTTGGCAGATTCTGCACAATTGAGTTGGGGCCTGCCATCCCAGGGACTCTTTGTA
GATTGTGATTGAGGTTGATTGGCAAATCTGGAAAGCTTTTGCATGGTGCCTGCTTATTAT
ATCTGGATTCAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TACAGATGATAGTGAAAAAAAACCCCAGCGACGCAATCGTAGCCGCAGGCGTCGTTTCAG
GGGTCAGGCAGAAGATAGACAGCCAGGTAACTTGAGTGGACCTGTTGACAACACCAGGTC
ACAAGCATGAAAAAAATGTCATGTGTCTGCTTTCTAAATATATTATACTTACATGTACAC
ATGTGTGCATATACATTCAAGATGTGCATTGCATAAATTGTTTACTCAACTAATAAGACT
ACTATTCTTAAGAAAATGCATTCTTCCTTCACACCATAAATGTTTAGTAACCTGTCTAAT
TAAACTAATGTTGTGTCTCAATTTTTTACATGGAAATACTGTTGAGAAGACCATTATTTT
GGCCACTTGGCAGATTCTGCACAATTGAGTTGGGGCCTGCCATCCCAGGGACTCTTTGTA
GATTGTGATTGAGGTTGATTGGCAAATCTGGAAAGCTTTTGCATGGTGCCTGCTTATTAT
ATCTGGATTCAG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               40-237, + strand, RNAz p=0.71409

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               40-237, + strand, RNAz p=0.71409

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-492, gnl|bosTau2|chr1 (52714626-52715111)
               

               
               1-492, gnl|Hg17|chr3 (182171560-182172043)
               

               
               1-492, gnl|Mm7|chr3 (33873735-33874204)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-492, gnl|bosTau2|chr1 (52714626-52715111)
               

               
               1-492, gnl|Hg17|chr3 (182171560-182172043)
               

               
               1-492, gnl|Mm7|chr3 (33873735-33874204)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               lin (0.145603)
               

               
               spc (0.113366)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lin (0.145603)
               

               
               spc (0.113366)

	1-492, gnl\|bosTau2\|chr1 (52714626-52715111)
	1-492, gnl\|Hg17\|chr3 (182171560-182172043)
	1-492, gnl\|Mm7\|chr3 (33873735-33874204)