Non-Coding RNA Search

Ss1.1-rlin16_c7.5

Sequence:


               
               ACCTATACCACAGCTCACAGCAATGTCTAATCCTTAACCCACTGAGAGAGGCCAGGAATC
AAACTTGCCTCCTCATGGATATTAGTTGGGTTCTTAACCCACTGAGCCACAATGGGAACT
CCAAGACTAGTCTTTTAAAACAAGAGAGAAGAAGAAATCCTTTTACCCGAAGCTTTCTGT
TACCTCATTTCCCATGCTGCTTCTGTTTGCATTTCTCCTCCAATTCACTCCTGTTCATCC
CCCCACTTCTAACTTGTTAAACCACATCCTTCTTCCTCTCTAGTCCTTATGTTGAAATAC
CTATTTTTTTTTTTTCTAACAATTACATTGAGTGTGCTCATTGGTTGGTGAAATTTTAAA
AAGTCTAGTTTAAATCCAATTAATTTCAGCCCTGCAAAGATTCTGTCCATGGGCTTTTGG
GGAATGGAATACAGTGAGTACAGAGGTTCTCTAACTGATATGATGGAGAATATAAGAATG
TCTCTATAAATGGAGAGCAGCCTGTACTTTTCAGATCCACAGAAGTTTTCCTGTCAAAGA
CCTGTCAGTGAATACAAGCCACACGTGTCTATTTAGGGTAAACGTGACTGTCGCTGGAGA
GCCTCATAACCCTCTTCTGCCTCTGCCTTTGGGACCGGGAACTCAGCCCTCTATTTAAAT
CTTGCCAGCTTTGTAGTTGTTGCTATGGTGTGGTCCGCCCTCCCTGTTTTCATTCAGATT
CTGAGTCCTGGATAAAATGCGCAGATTCTAACCCTCACCTCCTCTCTGCCTCTAGCGGAT
GCAGAGCTGCATTTTGACGTGGAGCTGATTGCACTCATCCGAGCCAACTACTGGCAAAAG
CTGGTGAAGGGCATTTTGCCTCTGGTAGGCATGGCCATGGTGCCAGCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACCTATACCACAGCTCACAGCAATGTCTAATCCTTAACCCACTGAGAGAGGCCAGGAATC
AAACTTGCCTCCTCATGGATATTAGTTGGGTTCTTAACCCACTGAGCCACAATGGGAACT
CCAAGACTAGTCTTTTAAAACAAGAGAGAAGAAGAAATCCTTTTACCCGAAGCTTTCTGT
TACCTCATTTCCCATGCTGCTTCTGTTTGCATTTCTCCTCCAATTCACTCCTGTTCATCC
CCCCACTTCTAACTTGTTAAACCACATCCTTCTTCCTCTCTAGTCCTTATGTTGAAATAC
CTATTTTTTTTTTTTCTAACAATTACATTGAGTGTGCTCATTGGTTGGTGAAATTTTAAA
AAGTCTAGTTTAAATCCAATTAATTTCAGCCCTGCAAAGATTCTGTCCATGGGCTTTTGG
GGAATGGAATACAGTGAGTACAGAGGTTCTCTAACTGATATGATGGAGAATATAAGAATG
TCTCTATAAATGGAGAGCAGCCTGTACTTTTCAGATCCACAGAAGTTTTCCTGTCAAAGA
CCTGTCAGTGAATACAAGCCACACGTGTCTATTTAGGGTAAACGTGACTGTCGCTGGAGA
GCCTCATAACCCTCTTCTGCCTCTGCCTTTGGGACCGGGAACTCAGCCCTCTATTTAAAT
CTTGCCAGCTTTGTAGTTGTTGCTATGGTGTGGTCCGCCCTCCCTGTTTTCATTCAGATT
CTGAGTCCTGGATAAAATGCGCAGATTCTAACCCTCACCTCCTCTCTGCCTCTAGCGGAT
GCAGAGCTGCATTTTGACGTGGAGCTGATTGCACTCATCCGAGCCAACTACTGGCAAAAG
CTGGTGAAGGGCATTTTGCCTCTGGTAGGCATGGCCATGGTGCCAGCC

Aligned organism(s): 5 entry(ies)

More info

Aligned organism(s): 5 entry(ies)

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               153-470, gnl|bosTau2|chr5 (26205752-26206056)
               

               
               153-470, gnl|Hg17|chr12 (47602848-47602531)
               


               
               485-888, gnl|bosTau2|chr5 (26206044-26206444)
               

               
               485-888, gnl|Hg17|chr12 (47602543-47602139)
               

               
               485-888, gnl|Mm7|chr15 (98710506-98709992)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               153-470, gnl|bosTau2|chr5 (26205752-26206056)
               

               
               153-470, gnl|Hg17|chr12 (47602848-47602531)
               


               
               485-888, gnl|bosTau2|chr5 (26206044-26206444)
               

               
               485-888, gnl|Hg17|chr12 (47602543-47602139)
               

               
               485-888, gnl|Mm7|chr15 (98710506-98709992)

Expressed library(ies): 3 entry(ies)

More info

Expressed library(ies): 3 entry(ies)

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               cbl (0.229595)
               

               
               mcp (0.170648)
               

               
               lin (0.145603)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbl (0.229595)
               

               
               mcp (0.170648)
               

               
               lin (0.145603)

	153-470, gnl\|bosTau2\|chr5 (26205752-26206056)
	153-470, gnl\|Hg17\|chr12 (47602848-47602531)

	485-888, gnl\|bosTau2\|chr5 (26206044-26206444)
	485-888, gnl\|Hg17\|chr12 (47602543-47602139)
	485-888, gnl\|Mm7\|chr15 (98710506-98709992)