Non-Coding RNA Search

Ss1.1-rlin17_e12.5

Sequence:


               
               GACCCAGTGTGTCAGCAGAAAAGGAAGGGAGGGAGAAAGAGAAGCACGTCCTCCTGTCAC
TCAGCCTTCTGCACAGATGGAAGCTCCTCGGGGTTGTTGAGAAAGGTTGTTGGGTTTTTT
TGCTTTTTGGGG------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------ATATCCATGAGCTGATCTCATGCTGTGTGGAAATGA
CCCCCTCAAAGAGGGCTGGATGGCAGGTCTCTGTACTCAAGTACCTCTTTCAGGGTTTTC
TAACCCTGACACAGACTGTATGCACCTCCTCTCATCTGTGCTATTCTGTGTAATTTAATT
TTGCCTGGCTAAGTCTGCTTCTGAATTATTTGTAAAATTTGCTCTATATTTATAATAAAA
ATTATATATCAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GACCCAGTGTGTCAGCAGAAAAGGAAGGGAGGGAGAAAGAGAAGCACGTCCTCCTGTCAC
TCAGCCTTCTGCACAGATGGAAGCTCCTCGGGGTTGTTGAGAAAGGTTGTTGGGTTTTTT
TGCTTTTTGGGG------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------ATATCCATGAGCTGATCTCATGCTGTGTGGAAATGA
CCCCCTCAAAGAGGGCTGGATGGCAGGTCTCTGTACTCAAGTACCTCTTTCAGGGTTTTC
TAACCCTGACACAGACTGTATGCACCTCCTCTCATCTGTGCTATTCTGTGTAATTTAATT
TTGCCTGGCTAAGTCTGCTTCTGAATTATTTGTAAAATTTGCTCTATATTTATAATAAAA
ATTATATATCAG

Aligned organism(s): 12 entry(ies)

More info

Aligned organism(s): 12 entry(ies)

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               146-360, gnl|bosTau2|chr18 (45178553-45178341)
               

               
               146-360, gnl|canFam2|chr1 (114811248-114811005)
               

               
               146-360, gnl|echTel1|scaffold_285146 (56925-56692)
               

               
               146-360, gnl|hg17|chr19 (47703286-47703537)
               

               
               146-360, gnl|Hg17|chr19 (47703521-47703305)
               

               
               146-360, gnl|loxAfr1|scaffold_31802 (39536-39285)
               

               
               146-360, gnl|mm7|chr7 (22289158-22289373)
               

               
               146-360, gnl|Mm7|chr7 (22289357-22289163)
               

               
               146-360, gnl|oryCun1|scaffold_177776 (34998-35244)
               

               
               146-360, gnl|panTro1|chr20 (44599615-44599866)
               

               
               146-360, gnl|rheMac2|chr19 (48829046-48829296)
               

               
               146-360, gnl|rn3|chr1 (80820658-80820879)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               146-360, gnl|bosTau2|chr18 (45178553-45178341)
               

               
               146-360, gnl|canFam2|chr1 (114811248-114811005)
               

               
               146-360, gnl|echTel1|scaffold_285146 (56925-56692)
               

               
               146-360, gnl|hg17|chr19 (47703286-47703537)
               

               
               146-360, gnl|Hg17|chr19 (47703521-47703305)
               

               
               146-360, gnl|loxAfr1|scaffold_31802 (39536-39285)
               

               
               146-360, gnl|mm7|chr7 (22289158-22289373)
               

               
               146-360, gnl|Mm7|chr7 (22289357-22289163)
               

               
               146-360, gnl|oryCun1|scaffold_177776 (34998-35244)
               

               
               146-360, gnl|panTro1|chr20 (44599615-44599866)
               

               
               146-360, gnl|rheMac2|chr19 (48829046-48829296)
               

               
               146-360, gnl|rn3|chr1 (80820658-80820879)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

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               lin (0.145603)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lin (0.145603)

	146-360, gnl\|bosTau2\|chr18 (45178553-45178341)
	146-360, gnl\|canFam2\|chr1 (114811248-114811005)
	146-360, gnl\|echTel1\|scaffold_285146 (56925-56692)
	146-360, gnl\|hg17\|chr19 (47703286-47703537)
	146-360, gnl\|Hg17\|chr19 (47703521-47703305)
	146-360, gnl\|loxAfr1\|scaffold_31802 (39536-39285)
	146-360, gnl\|mm7\|chr7 (22289158-22289373)
	146-360, gnl\|Mm7\|chr7 (22289357-22289163)
	146-360, gnl\|oryCun1\|scaffold_177776 (34998-35244)
	146-360, gnl\|panTro1\|chr20 (44599615-44599866)
	146-360, gnl\|rheMac2\|chr19 (48829046-48829296)
	146-360, gnl\|rn3\|chr1 (80820658-80820879)