Ss1.1-rlin18_a23.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TTAATGTATGACATGCTGACTGGAGCACCCCCGTTCACTGGGGAGAATAGAAAGAAAACA ATTGACAAAATCCTCAAATGTAAGCTCAATTTGCCTCCCTACCTCACACAAGAAGCCAGA GATCTGCTTAAAAAGCTGCTGAAAAGAAATGCTGCTTCTCGTCTTGGAGCTGGTCCTGGG GACGCTGGAGAAGTTCAAGTTCATCCATTCTTTAGACATATTAACTGGGAAGAACTGCTT GCTCGGAAGGTGGAGCCCCCTTTTAAACCTCTGTTGCAATCTGAAGAGGATGTGAGTCAA TTTGATTCAAAGTTTACACGTCAAACACCTGTTGACAGCCCAGATGACTCAACTCTCAGT GAAAGTGCCAACCAGGTCTTTCTGGGTTTTACATATGTGGCTCCATCTGTACTTGAAAGT GTGAAAGAGAAGTTTTCCTTTGAACCAAAAATCCGGTCACCTCGAAGATTTATTGGAAGC CCACGAACACCTGTCAGCCCAGTCAAATTTTCTGCTGGGGATTTCTGGGGAAGAGGTGCT TCAGCCAGCACGGCAAATCCTCAGACTCCTGTGGAATACCCAATGGAAACAAGTGGAATA GAGCAGATGGATGTGACGATGAGCGGGGAAGCTTCTGCACCACTTCCAATACGACAGCCG AACTCCGGGCCATACAAAAAACAAGCTTTTCCCATGATCTCCAAACGACCAGAGCACCTG CGTATGAATCTATGACAGAGCAATGCTTTTAATGAATTGAAGGCAAAAAAAGGTGGGAAG GGGATGTGTGAGCATCCTGCAAGGTGAAACAAGAAAACTCAAATTGACAGTCTCGAAGAG TCAGTGTCATTACATAGAACACTTTGGACAGAGGAAAAATAAACATGGATTTTAAAAAAT CAATCAATGGTGCAAAAAAACTTAAGTGAAAATAGTATTGTGGAACTCTTAGGCACATCA ATTAATTGATTCCTAGCGACATCTTCTCAACCTATCAAGGATTTTCATGTTGATGGCTGA AACTGACAGTATTAAGGGTAGGATGTTGCTTCTGAATCACTGTTGAGTTCTGATTGTGTC GAAGAAGCGTTATCCTTTCATTAGGCAAAGTATGAAATTGCCTGTAATACTTGCAACTAA GGACAAATTAGCATGCAAGCTTGGTCAAACCTTTTCCAGCAACATGGAATCAAAGATGAA AGAAACTTATCAATTGATGTTTTACGTGCAAACAACCTGAATCTTTTTTTTATATAAATA TATATTTTTCAAATAGATTTTTGATTCAGCTCATTATGGAAAACATCCCAAACTTTAAAA TGCGAAATTATTGGTTGGTTTGAAGAAAGCCAGACAACGTCTGTTTCTTCTCTTGGTGAA ATAATAAAAATGCAAATGAATCATTGTTAACCTCAGCTATGGCTCGTTTGAGGGATTGGG GTGGACTTGGGGTTTATTTTCAGTAACCCAGCTGCAATACCTGTCTGTAATACTAGAAAA AAAATCTATTTAATCATTTCTACTTGCAGTACTGCTATGTGCTAAGCTTAACTGGAAGCC TTGGAATGGGCGTAAGTTGTGTGTCCTACATTTCATCTTTATCCTGGGCCTGCATTGCAC TGGAAAAATATCACCATCTTATACCAGTATTTGGTTCAAGACATCAAGTGTGTTCAGCCC ATGGCTGAAGAAGGACAGAAGTCAGGATAAAATGCATACTGAGGGCAGCAGAGTGAGAGG AGAGAGGAGGGAGATCCAGGGGAAGAGGGTGTTGCTATGGTTCACTCTCTATGTCTAATC TCTTTACAGAAGATTGGTAAGGTTTTAAGTTTTACTTCTTTTTTACTGTTTTTGCTGTCT GCCTTCCTTACATTTTTCCCTCAGTGGTTTTAAAAGGAAAAAATATTTTTTTCTCCTATA TTGGGGCTACATTTTTTGATTGTAAAAATATTTGATGGCCTTTTGATGAATGTCTTCCAC AGTGAATAAGAAAACTTAGTGGCTTTATTTAGGAAACATGTTAACAAGATACTATGTTTT TGAAATTGTAACCAAGTCTACATAAATGATTTACAGGTACAAAGAATAAAAATAAAGGTA ACTTTACCTTTCTTAAATACTTCCTGCCTTAAAGAGCATTTCCATGACTTTAGCTGGTGA AAGGGTTTAATATCTGCAGAGCTTTATAAAAATAGATTGCAGTGCATACTGGTATAATTG ATGATCATGCAGTTGCAGTTGAGTCTTATCACCTCTTTTTGTTTGTCTTTTATAATGTCT TCAGTCTGAGTGTGCGAAGTCAATTTGTAATATTTTGCAACCCTACGATTTTTTAAAATT GATGCTGCTTGCTATGTTCTCCAAATCTTTTTGAGCCATAGGATCCAAGCCATAAAATTC TTTATCTATTTTGAATTCAGTCCGAAAAGAGAAAAGCTTTGCTTATTTAAATGGCAGTTC AAGTGAGATAAGATGAAATCTTATGACAGTAAGCAAAAATAGAACCATGAAAAATGATTG GAAATATATATTTTTCATTTGTGGCAATAAATGAAAGAATTGGTAACA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TTAATGTATGACATGCTGACTGGAGCACCCCCGTTCACTGGGGAGAATAGAAAGAAAACA ATTGACAAAATCCTCAAATGTAAGCTCAATTTGCCTCCCTACCTCACACAAGAAGCCAGA GATCTGCTTAAAAAGCTGCTGAAAAGAAATGCTGCTTCTCGTCTTGGAGCTGGTCCTGGG GACGCTGGAGAAGTTCAAGTTCATCCATTCTTTAGACATATTAACTGGGAAGAACTGCTT GCTCGGAAGGTGGAGCCCCCTTTTAAACCTCTGTTGCAATCTGAAGAGGATGTGAGTCAA TTTGATTCAAAGTTTACACGTCAAACACCTGTTGACAGCCCAGATGACTCAACTCTCAGT GAAAGTGCCAACCAGGTCTTTCTGGGTTTTACATATGTGGCTCCATCTGTACTTGAAAGT GTGAAAGAGAAGTTTTCCTTTGAACCAAAAATCCGGTCACCTCGAAGATTTATTGGAAGC CCACGAACACCTGTCAGCCCAGTCAAATTTTCTGCTGGGGATTTCTGGGGAAGAGGTGCT TCAGCCAGCACGGCAAATCCTCAGACTCCTGTGGAATACCCAATGGAAACAAGTGGAATA GAGCAGATGGATGTGACGATGAGCGGGGAAGCTTCTGCACCACTTCCAATACGACAGCCG AACTCCGGGCCATACAAAAAACAAGCTTTTCCCATGATCTCCAAACGACCAGAGCACCTG CGTATGAATCTATGACAGAGCAATGCTTTTAATGAATTGAAGGCAAAAAAAGGTGGGAAG GGGATGTGTGAGCATCCTGCAAGGTGAAACAAGAAAACTCAAATTGACAGTCTCGAAGAG TCAGTGTCATTACATAGAACACTTTGGACAGAGGAAAAATAAACATGGATTTTAAAAAAT CAATCAATGGTGCAAAAAAACTTAAGTGAAAATAGTATTGTGGAACTCTTAGGCACATCA ATTAATTGATTCCTAGCGACATCTTCTCAACCTATCAAGGATTTTCATGTTGATGGCTGA AACTGACAGTATTAAGGGTAGGATGTTGCTTCTGAATCACTGTTGAGTTCTGATTGTGTC GAAGAAGCGTTATCCTTTCATTAGGCAAAGTATGAAATTGCCTGTAATACTTGCAACTAA GGACAAATTAGCATGCAAGCTTGGTCAAACCTTTTCCAGCAACATGGAATCAAAGATGAA AGAAACTTATCAATTGATGTTTTACGTGCAAACAACCTGAATCTTTTTTTTATATAAATA TATATTTTTCAAATAGATTTTTGATTCAGCTCATTATGGAAAACATCCCAAACTTTAAAA TGCGAAATTATTGGTTGGTTTGAAGAAAGCCAGACAACGTCTGTTTCTTCTCTTGGTGAA ATAATAAAAATGCAAATGAATCATTGTTAACCTCAGCTATGGCTCGTTTGAGGGATTGGG GTGGACTTGGGGTTTATTTTCAGTAACCCAGCTGCAATACCTGTCTGTAATACTAGAAAA AAAATCTATTTAATCATTTCTACTTGCAGTACTGCTATGTGCTAAGCTTAACTGGAAGCC TTGGAATGGGCGTAAGTTGTGTGTCCTACATTTCATCTTTATCCTGGGCCTGCATTGCAC TGGAAAAATATCACCATCTTATACCAGTATTTGGTTCAAGACATCAAGTGTGTTCAGCCC ATGGCTGAAGAAGGACAGAAGTCAGGATAAAATGCATACTGAGGGCAGCAGAGTGAGAGG AGAGAGGAGGGAGATCCAGGGGAAGAGGGTGTTGCTATGGTTCACTCTCTATGTCTAATC TCTTTACAGAAGATTGGTAAGGTTTTAAGTTTTACTTCTTTTTTACTGTTTTTGCTGTCT GCCTTCCTTACATTTTTCCCTCAGTGGTTTTAAAAGGAAAAAATATTTTTTTCTCCTATA TTGGGGCTACATTTTTTGATTGTAAAAATATTTGATGGCCTTTTGATGAATGTCTTCCAC AGTGAATAAGAAAACTTAGTGGCTTTATTTAGGAAACATGTTAACAAGATACTATGTTTT TGAAATTGTAACCAAGTCTACATAAATGATTTACAGGTACAAAGAATAAAAATAAAGGTA ACTTTACCTTTCTTAAATACTTCCTGCCTTAAAGAGCATTTCCATGACTTTAGCTGGTGA AAGGGTTTAATATCTGCAGAGCTTTATAAAAATAGATTGCAGTGCATACTGGTATAATTG ATGATCATGCAGTTGCAGTTGAGTCTTATCACCTCTTTTTGTTTGTCTTTTATAATGTCT TCAGTCTGAGTGTGCGAAGTCAATTTGTAATATTTTGCAACCCTACGATTTTTTAAAATT GATGCTGCTTGCTATGTTCTCCAAATCTTTTTGAGCCATAGGATCCAAGCCATAAAATTC TTTATCTATTTTGAATTCAGTCCGAAAAGAGAAAAGCTTTGCTTATTTAAATGGCAGTTC AAGTGAGATAAGATGAAATCTTATGACAGTAAGCAAAAATAGAACCATGAAAAATGATTG GAAATATATATTTTTCATTTGTGGCAATAAATGAAAGAATTGGTAACA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 1021-1219, + strand, RNAz p=0.957579 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1021-1219, + strand, RNAz p=0.957579 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 3' of NM_003161, + |
| Aligned organism(s): 55 entry(ies) | More info |
| Aligned organism(s): 55 entry(ies) | Help | Less info |
| 28-135, gnl|bosTau2|chr19 (5130327-5130434) | |
| 28-135, gnl|canFam2|chr9 (37736877-37737005) | |
| 28-135, gnl|danRer3|chr10 (27088552-27088695) | |
| 28-135, gnl|dasNov1|scaffold_9478 (25350-25208) | |
| 28-135, gnl|echTel1|scaffold_309621 (34468-34326) | |
| 28-135, gnl|fr1|chrUn (152683478-152683335) | |
| 28-135, gnl|galGal2|chr19 (6956161-6956321) | |
| 28-135, gnl|hg17|chr17 (20569502-20569648) | |
| 28-135, gnl|Hg17|chr17 (55367336-55367443) | |
| 28-135, gnl|loxAfr1|scaffold_47293 (16275-16417) | |
| 28-135, gnl|mm7|chr11 (86582840-86582726) | |
| 28-135, gnl|Mm7|chr11 (86582821-86582714) | |
| 28-135, gnl|monDom2|scaffold_56 (2650863-2650721) | |
| 28-135, gnl|oryCun1|scaffold_96829 (5419-5279) | |
| 28-135, gnl|panTro1|chrUn_random (19610779-19610637) | |
| 28-135, gnl|rheMac2|chr16 (44182353-44182495) | |
| 28-135, gnl|rn3|chr10 (76681495-76681353) | |
| 28-135, gnl|tetNig1|chrUn_random (11107407-11107526) | |
| 28-135, gnl|xenTro1|scaffold_38 (2993881-2993754) | |
| 276-385, gnl|bosTau2|chr19 (5134974-5135083) | |
| 276-385, gnl|canFam2|chr9 (37742297-37742428) | |
| 276-385, gnl|canFam2|chr9 (37742430-37742305) | |
| 276-385, gnl|danRer3|chr10 (27089103-27089233) | |
| 276-385, gnl|danRer3|chr15 (11202199-11202333) | |
| 276-385, gnl|dasNov1|scaffold_9478 (22700-22567) | |
| 276-385, gnl|dasNov1|scaffold_9478 (22565-22690) | |
| 276-385, gnl|echTel1|scaffold_202386 (906-1039) | |
| 276-385, gnl|echTel1|scaffold_202386 (1045-916) | |
| 276-385, gnl|fr1|chrUn (152682939-152682816) | |
| 276-385, gnl|fr1|chrUn (152682804-152682934) | |
| 276-385, gnl|galGal2|chr19 (6958743-6958868) | |
| 276-385, gnl|galGal2|chr19 (6958870-6958745) | |
| 276-385, gnl|hg17|chr17 (20575088-20575222) | |
| 276-385, gnl|Hg17|chr17 (55372978-55373087) | |
| 276-385, gnl|hg17|chr17_random (591825-591950) | |
| 276-385, gnl|loxAfr1|scaffold_47293 (20770-20903) | |
| 276-385, gnl|loxAfr1|scaffold_47293 (20909-20780) | |
| 276-385, gnl|mm7|chr11 (86576825-86576694) | |
| 276-385, gnl|mm7|chr11 (86576692-86576817) | |
| 276-385, gnl|Mm7|chr11 (86576807-86576698) | |
| 276-385, gnl|monDom2|scaffold_56 (2647429-2647302) | |
| 276-385, gnl|monDom2|scaffold_56 (2647300-2647423) | |
| 276-385, gnl|panTro1|chr19 (47475348-47475223) | |
| 276-385, gnl|panTro1|chrUn_random (19605212-19605078) | |
| 276-385, gnl|rheMac2|chr16 (44187918-44188052) | |
| 276-385, gnl|rheMac2|chr16 (44188054-44187929) | |
| 276-385, gnl|rn3|chr10 (76676474-76676343) | |
| 276-385, gnl|rn3|chr10 (76676341-76676466) | |
| 276-385, gnl|tetNig1|chrUn_random (11107895-11108008) | |
| 276-385, gnl|tetNig1|chrUn_random (11108008-11107895) | |
| 276-385, gnl|xenTro1|scaffold_38 (2990047-2989913) | |
| 276-385, gnl|xenTro1|scaffold_38 (2989911-2990044) | |
| 496-2551, gnl|bosTau2|chr19 (5138901-5140950) | |
| 496-2551, gnl|Hg17|chr17 (55378692-55380766) | |
| 496-2551, gnl|Mm7|chr11 (86572872-86570888) |
| Aligned organism(s): 55 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 28-135, gnl|bosTau2|chr19 (5130327-5130434) | |
| 28-135, gnl|canFam2|chr9 (37736877-37737005) | |
| 28-135, gnl|danRer3|chr10 (27088552-27088695) | |
| 28-135, gnl|dasNov1|scaffold_9478 (25350-25208) | |
| 28-135, gnl|echTel1|scaffold_309621 (34468-34326) | |
| 28-135, gnl|fr1|chrUn (152683478-152683335) | |
| 28-135, gnl|galGal2|chr19 (6956161-6956321) | |
| 28-135, gnl|hg17|chr17 (20569502-20569648) | |
| 28-135, gnl|Hg17|chr17 (55367336-55367443) | |
| 28-135, gnl|loxAfr1|scaffold_47293 (16275-16417) | |
| 28-135, gnl|mm7|chr11 (86582840-86582726) | |
| 28-135, gnl|Mm7|chr11 (86582821-86582714) | |
| 28-135, gnl|monDom2|scaffold_56 (2650863-2650721) | |
| 28-135, gnl|oryCun1|scaffold_96829 (5419-5279) | |
| 28-135, gnl|panTro1|chrUn_random (19610779-19610637) | |
| 28-135, gnl|rheMac2|chr16 (44182353-44182495) | |
| 28-135, gnl|rn3|chr10 (76681495-76681353) | |
| 28-135, gnl|tetNig1|chrUn_random (11107407-11107526) | |
| 28-135, gnl|xenTro1|scaffold_38 (2993881-2993754) | |
| 276-385, gnl|bosTau2|chr19 (5134974-5135083) | |
| 276-385, gnl|canFam2|chr9 (37742297-37742428) | |
| 276-385, gnl|canFam2|chr9 (37742430-37742305) | |
| 276-385, gnl|danRer3|chr10 (27089103-27089233) | |
| 276-385, gnl|danRer3|chr15 (11202199-11202333) | |
| 276-385, gnl|dasNov1|scaffold_9478 (22700-22567) | |
| 276-385, gnl|dasNov1|scaffold_9478 (22565-22690) | |
| 276-385, gnl|echTel1|scaffold_202386 (906-1039) | |
| 276-385, gnl|echTel1|scaffold_202386 (1045-916) | |
| 276-385, gnl|fr1|chrUn (152682939-152682816) | |
| 276-385, gnl|fr1|chrUn (152682804-152682934) | |
| 276-385, gnl|galGal2|chr19 (6958743-6958868) | |
| 276-385, gnl|galGal2|chr19 (6958870-6958745) | |
| 276-385, gnl|hg17|chr17 (20575088-20575222) | |
| 276-385, gnl|Hg17|chr17 (55372978-55373087) | |
| 276-385, gnl|hg17|chr17_random (591825-591950) | |
| 276-385, gnl|loxAfr1|scaffold_47293 (20770-20903) | |
| 276-385, gnl|loxAfr1|scaffold_47293 (20909-20780) | |
| 276-385, gnl|mm7|chr11 (86576825-86576694) | |
| 276-385, gnl|mm7|chr11 (86576692-86576817) | |
| 276-385, gnl|Mm7|chr11 (86576807-86576698) | |
| 276-385, gnl|monDom2|scaffold_56 (2647429-2647302) | |
| 276-385, gnl|monDom2|scaffold_56 (2647300-2647423) | |
| 276-385, gnl|panTro1|chr19 (47475348-47475223) | |
| 276-385, gnl|panTro1|chrUn_random (19605212-19605078) | |
| 276-385, gnl|rheMac2|chr16 (44187918-44188052) | |
| 276-385, gnl|rheMac2|chr16 (44188054-44187929) | |
| 276-385, gnl|rn3|chr10 (76676474-76676343) | |
| 276-385, gnl|rn3|chr10 (76676341-76676466) | |
| 276-385, gnl|tetNig1|chrUn_random (11107895-11108008) | |
| 276-385, gnl|tetNig1|chrUn_random (11108008-11107895) | |
| 276-385, gnl|xenTro1|scaffold_38 (2990047-2989913) | |
| 276-385, gnl|xenTro1|scaffold_38 (2989911-2990044) | |
| 496-2551, gnl|bosTau2|chr19 (5138901-5140950) | |
| 496-2551, gnl|Hg17|chr17 (55378692-55380766) | |
| 496-2551, gnl|Mm7|chr11 (86572872-86570888) |
| Expressed library(ies): 26 entry(ies) | More info |
| Expressed library(ies): 26 entry(ies) | Help | Less info |
| ski (0.440205) | |
| gul (0.355177) | |
| cte (0.29274) | |
| liv (0.292569) | |
| lin (0.291206) | |
| kid (0.259471) | |
| ova (0.258264) | |
| thg (0.253582) | |
| nms (0.213858) | |
| nep (0.183925) | |
| sag (0.182715) | |
| fty (0.17584) | |
| ill (0.175593) | |
| nje (0.16592) | |
| fco (0.157208) | |
| isp (0.150376) | |
| bfe (0.149858) | |
| fat (0.147427) | |
| hlv (0.139256) | |
| lyg (0.133103) | |
| cov (0.132153) | |
| ret (0.128733) | |
| tra (0.123092) | |
| eep (0.122564) | |
| spc (0.113366) | |
| ldo (0.0970026) |
| Expressed library(ies): 26 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ski (0.440205) | |
| gul (0.355177) | |
| cte (0.29274) | |
| liv (0.292569) | |
| lin (0.291206) | |
| kid (0.259471) | |
| ova (0.258264) | |
| thg (0.253582) | |
| nms (0.213858) | |
| nep (0.183925) | |
| sag (0.182715) | |
| fty (0.17584) | |
| ill (0.175593) | |
| nje (0.16592) | |
| fco (0.157208) | |
| isp (0.150376) | |
| bfe (0.149858) | |
| fat (0.147427) | |
| hlv (0.139256) | |
| lyg (0.133103) | |
| cov (0.132153) | |
| ret (0.128733) | |
| tra (0.123092) | |
| eep (0.122564) | |
| spc (0.113366) | |
| ldo (0.0970026) |