Non-Coding RNA Search

Ss1.1-rlin18_i20.5

Sequence:


               
               CAATGCCTTTACCAAAGTGGCCTTAAATATGAGTAGTGAATTGAGAACATCTTGAATTCT
TAAATTAAAATTTCAGAAGACTTCTAGTGACTAACTTTTATGTCTAAAGAGAAAATTTTA
TAAAAAGGCCATGTAGAAAATTTTATTTAAAACTATGACTGCTATATTCAGGAGTATGTC
AGTGGTAAAGCATTTAAATGTAGCTTGTTAGATTCACCATAATTCTTCTAATTTCTTTGC
AACTCCTTAATTTTGTGAAAATTTGTATATATAAAGAATTTGCATGTATGTGTATTTACA
AATTTTTTTAAGTATCTTGAATTCTCAGACTGCAAAAGGCTTATTTTAACTATTGATTTT
TTTAAAAAAAAATTGTCTTTGAATGTATTGGAAGCAGACATGCATTAACTGTGACATGAT
TGCACCTCATTTTTTTTTTTTCCTTTGTTTGGACAGAATGATATTAATAGGACATTTGTT
TATGTTCATTTCTAGTGGGAAAGAAACTGGAACCCAGTGTTACCTTGAAGTTATAGAATA
CTTTGTTTAAAAAGGCAACGATACTAATGTTTAGTTATATCTTTATGTTAATATTCAAAT
GAATTTGTTTAAATATTTATATAATGCCTCATTCATCCAGTGATAATATAGCAATCTCAA
TCAAAACAGAACACAACTGAGAAACCTGTAATAGTTTTTTAAAAAATGCCTTTGAGCAGC
CCACATAAGTCACAAAATCTATATGTTAGAGCTCATGCGTTTGTTCTTATGTGAGATTTT
GATTAATATATTTCCCAGCCCATAGCATACTAGCAGTTCAGGAGTGATGGCTTGAAAGGA
AGGAGACAGGAAAAACCATTAAGAGCAAACACTGTTGAAGACCTGTTAGTGTAGCGACAG
CCAGCCCCACTGTTAGAGGACATTACTACATTGCATCATCTTTTGTTAATTGTCTGTTAC
TGTGACTCTGTGTCACAAGAAAAGGTGAACTTACATATATAAATATGTGATACATGTTTG
AAAAGCTTTCTTATACTGATTAAGATTGTTTTTAAGTTTTGGTATTAAAAGAGGTGAACA
TCAGCTTCCTCAAATATTATTTATTCATGTTGAATACCTTTTCCAATGGTGACTACAGGA
GTTGTTTTCATACTATATTAAAATCCGTGTAGATTTTTAGACTTGTTGAAACATTGCTGT
CCATTGTGTATCTAGCTGAATGTGTGGTATCTGAACTATGATAAGCAAGGAGACTGGGAA
ATCTCTGCCCCTTTTCTGAGCGGAATGCCTCTTTTAGAATTAAATGAATGCTGCAAAGGT
CTGGGTGTGTGTTGGTGTATACTTGAAATGTCTCTACATTTTTGGAGTCACCCTCCAGCC
CCCTTCTCATGGAGGGAATACACAAAATGTCTTGGAATTCCTATCTTTAGATTGTATTGG
GTCCCAATCAACTCATGTACAAAGTCGTGCTATACGATTGTAGGTCGTTACTCAGTTAAT
CCACCAGGCTTTCCATCTAAGAAATAAGTACATTAAACAGTTATTAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAATGCCTTTACCAAAGTGGCCTTAAATATGAGTAGTGAATTGAGAACATCTTGAATTCT
TAAATTAAAATTTCAGAAGACTTCTAGTGACTAACTTTTATGTCTAAAGAGAAAATTTTA
TAAAAAGGCCATGTAGAAAATTTTATTTAAAACTATGACTGCTATATTCAGGAGTATGTC
AGTGGTAAAGCATTTAAATGTAGCTTGTTAGATTCACCATAATTCTTCTAATTTCTTTGC
AACTCCTTAATTTTGTGAAAATTTGTATATATAAAGAATTTGCATGTATGTGTATTTACA
AATTTTTTTAAGTATCTTGAATTCTCAGACTGCAAAAGGCTTATTTTAACTATTGATTTT
TTTAAAAAAAAATTGTCTTTGAATGTATTGGAAGCAGACATGCATTAACTGTGACATGAT
TGCACCTCATTTTTTTTTTTTCCTTTGTTTGGACAGAATGATATTAATAGGACATTTGTT
TATGTTCATTTCTAGTGGGAAAGAAACTGGAACCCAGTGTTACCTTGAAGTTATAGAATA
CTTTGTTTAAAAAGGCAACGATACTAATGTTTAGTTATATCTTTATGTTAATATTCAAAT
GAATTTGTTTAAATATTTATATAATGCCTCATTCATCCAGTGATAATATAGCAATCTCAA
TCAAAACAGAACACAACTGAGAAACCTGTAATAGTTTTTTAAAAAATGCCTTTGAGCAGC
CCACATAAGTCACAAAATCTATATGTTAGAGCTCATGCGTTTGTTCTTATGTGAGATTTT
GATTAATATATTTCCCAGCCCATAGCATACTAGCAGTTCAGGAGTGATGGCTTGAAAGGA
AGGAGACAGGAAAAACCATTAAGAGCAAACACTGTTGAAGACCTGTTAGTGTAGCGACAG
CCAGCCCCACTGTTAGAGGACATTACTACATTGCATCATCTTTTGTTAATTGTCTGTTAC
TGTGACTCTGTGTCACAAGAAAAGGTGAACTTACATATATAAATATGTGATACATGTTTG
AAAAGCTTTCTTATACTGATTAAGATTGTTTTTAAGTTTTGGTATTAAAAGAGGTGAACA
TCAGCTTCCTCAAATATTATTTATTCATGTTGAATACCTTTTCCAATGGTGACTACAGGA
GTTGTTTTCATACTATATTAAAATCCGTGTAGATTTTTAGACTTGTTGAAACATTGCTGT
CCATTGTGTATCTAGCTGAATGTGTGGTATCTGAACTATGATAAGCAAGGAGACTGGGAA
ATCTCTGCCCCTTTTCTGAGCGGAATGCCTCTTTTAGAATTAAATGAATGCTGCAAAGGT
CTGGGTGTGTGTTGGTGTATACTTGAAATGTCTCTACATTTTTGGAGTCACCCTCCAGCC
CCCTTCTCATGGAGGGAATACACAAAATGTCTTGGAATTCCTATCTTTAGATTGTATTGG
GTCCCAATCAACTCATGTACAAAGTCGTGCTATACGATTGTAGGTCGTTACTCAGTTAAT
CCACCAGGCTTTCCATCTAAGAAATAAGTACATTAAACAGTTATTAAA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               393-509, - strand, RNAz p=0.83728
               

               
               930-1046, - strand, RNAz p=0.788168

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               393-509, - strand, RNAz p=0.83728
               

               
               930-1046, - strand, RNAz p=0.788168

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               1-1546, gnl|bosTau2|chr2 (69279672-69281197)
               

               
               1-1546, gnl|Hg17|chr2 (228245369-228246880)
               

               
               1-1546, gnl|Mm7|chr1 (83104384-83105782)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1546, gnl|bosTau2|chr2 (69279672-69281197)
               

               
               1-1546, gnl|Hg17|chr2 (228245369-228246880)
               

               
               1-1546, gnl|Mm7|chr1 (83104384-83105782)

Expressed library(ies): 14 entry(ies)

More info

Expressed library(ies): 14 entry(ies)

Help | Less info


               
               mgm (0.180343)
               

               
               sin (0.174948)
               

               
               rec (0.17307)
               

               
               fco (0.157208)
               

               
               isp (0.150376)
               

               
               bfe (0.149858)
               

               
               liv (0.146284)
               

               
               lin (0.145603)
               

               
               hyp (0.142837)
               

               
               sug (0.127291)
               

               
               eru (0.120048)
               

               
               pgl (0.118483)
               

               
               spc (0.113366)
               

               
               eje (0.0988338)

Expressed library(ies): 14 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mgm (0.180343)
               

               
               sin (0.174948)
               

               
               rec (0.17307)
               

               
               fco (0.157208)
               

               
               isp (0.150376)
               

               
               bfe (0.149858)
               

               
               liv (0.146284)
               

               
               lin (0.145603)
               

               
               hyp (0.142837)
               

               
               sug (0.127291)
               

               
               eru (0.120048)
               

               
               pgl (0.118483)
               

               
               spc (0.113366)
               

               
               eje (0.0988338)

	393-509, - strand, RNAz p=0.83728
	930-1046, - strand, RNAz p=0.788168

	1-1546, gnl\|bosTau2\|chr2 (69279672-69281197)
	1-1546, gnl\|Hg17\|chr2 (228245369-228246880)
	1-1546, gnl\|Mm7\|chr1 (83104384-83105782)

	mgm (0.180343)
	sin (0.174948)
	rec (0.17307)
	fco (0.157208)
	isp (0.150376)
	bfe (0.149858)
	liv (0.146284)
	lin (0.145603)
	hyp (0.142837)
	sug (0.127291)
	eru (0.120048)
	pgl (0.118483)
	spc (0.113366)
	eje (0.0988338)