Non-Coding RNA Search

Ss1.1-rlin18_m6.5

Sequence:


               
               TAAAACATACTTCATTCCAAGAGATGAAGAACAATCCATCTACCAATTACACAACACTTC
CAGATGAAGTCATGAACCAAAAAGTATCTGCCTTTATGAGAAAGGGGATTGCAGGAGACT
GGAAGAATTACTTTACAGTAGCCCTGAATGAGAAATTTGACATTCACTATGAGCAGCAAA
TGAAGGGGTCTACACTGAAGTTACGAACAGAGATCTAGGAAAGTTTTTGTGGTTACATCT
GAGATTAAAGTGTTATCACTTCTTACCTCTGTTATTTCAGACTGGTGGAGAATGAATCAG
GCTAAAAAGATCATGGTTGAGTTCATGTGATTTTTGAGATCTTCATATCAAAAACAAGAA
AGATTTTTTTACCTTGTTATCTGTTTTAATTTTGTTTCCTTTTTTACAAATATTGCAAAA
ATCTATAACCTGTGAGAATGATGTGGGAACACACAAATTGTTCAAGTTGTTAGAGCCTCA
TCGAAAATAACCAAGCATTCCAAATTCTTTAATTGTGTGATTACTTTTTTCCATTTATTG
GTACATTTAGTATATACAACATACATATATATACATATACACATAAATATATATTAATAA
CTGAACATGGATTTTGAAAACCTTGTTGGAAAAAATTAAAGAATAATTAAATATGAGGGC
ATAACTAGATCTATTATTTCCTTCCTGATATTTTCTTTCACCTTCTGCAAAATGGCTTAA
TTTGGAATTTTATTTAGTCTAATGTAAATGTGAGGCATAACAGAACTGATTTCCAGATGT
CTATAAATGATCCCAATGAGTGTTATTTATGCATAAATATCTCCAAATGATTTGAAATAT
TTATGTTCTAGAGTTCTTTCTGTTCTATAACAATACAATACAATGTTATAAATGTAAGCT
CTGTAAACTAAAGTTTTTTTTAATGTATCTTTTTATGTATCTTTTTTTTATTACTCAAAT
GAATTTTATCACATCTGTAGTTGTATAATGATCATAACAATTTAATTTCACAGGATTTCC
ATCCCACAGCCCAGGCACATCCCCCACCCCCCAAACTGTCTCCTCTGGAGACCATAAGTT
TTTCAATGTCTGTGAGTCAGCATCTGTTCTGCAAAGAGTAAACTAAAGTGTGCTTTTTTC
AAGTTCCACATGTCAGTGAAAGCATTTGATATTGGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TAAAACATACTTCATTCCAAGAGATGAAGAACAATCCATCTACCAATTACACAACACTTC
CAGATGAAGTCATGAACCAAAAAGTATCTGCCTTTATGAGAAAGGGGATTGCAGGAGACT
GGAAGAATTACTTTACAGTAGCCCTGAATGAGAAATTTGACATTCACTATGAGCAGCAAA
TGAAGGGGTCTACACTGAAGTTACGAACAGAGATCTAGGAAAGTTTTTGTGGTTACATCT
GAGATTAAAGTGTTATCACTTCTTACCTCTGTTATTTCAGACTGGTGGAGAATGAATCAG
GCTAAAAAGATCATGGTTGAGTTCATGTGATTTTTGAGATCTTCATATCAAAAACAAGAA
AGATTTTTTTACCTTGTTATCTGTTTTAATTTTGTTTCCTTTTTTACAAATATTGCAAAA
ATCTATAACCTGTGAGAATGATGTGGGAACACACAAATTGTTCAAGTTGTTAGAGCCTCA
TCGAAAATAACCAAGCATTCCAAATTCTTTAATTGTGTGATTACTTTTTTCCATTTATTG
GTACATTTAGTATATACAACATACATATATATACATATACACATAAATATATATTAATAA
CTGAACATGGATTTTGAAAACCTTGTTGGAAAAAATTAAAGAATAATTAAATATGAGGGC
ATAACTAGATCTATTATTTCCTTCCTGATATTTTCTTTCACCTTCTGCAAAATGGCTTAA
TTTGGAATTTTATTTAGTCTAATGTAAATGTGAGGCATAACAGAACTGATTTCCAGATGT
CTATAAATGATCCCAATGAGTGTTATTTATGCATAAATATCTCCAAATGATTTGAAATAT
TTATGTTCTAGAGTTCTTTCTGTTCTATAACAATACAATACAATGTTATAAATGTAAGCT
CTGTAAACTAAAGTTTTTTTTAATGTATCTTTTTATGTATCTTTTTTTTATTACTCAAAT
GAATTTTATCACATCTGTAGTTGTATAATGATCATAACAATTTAATTTCACAGGATTTCC
ATCCCACAGCCCAGGCACATCCCCCACCCCCCAAACTGTCTCCTCTGGAGACCATAAGTT
TTTCAATGTCTGTGAGTCAGCATCTGTTCTGCAAAGAGTAAACTAAAGTGTGCTTTTTTC
AAGTTCCACATGTCAGTGAAAGCATTTGATATTGGT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|1932729|gb|AAB51658.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|1932729|gb|AAB51658.1|

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               93-897, gnl|bosTau2|chr6 (47181902-47181111)
               

               
               93-897, gnl|Hg17|chr4 (70888596-70887039)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               93-897, gnl|bosTau2|chr6 (47181902-47181111)
               

               
               93-897, gnl|Hg17|chr4 (70888596-70887039)

Expressed library(ies): 11 entry(ies)

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Expressed library(ies): 11 entry(ies)

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               lin (1.45603)
               

               
               tra (0.738552)
               

               
               kid (0.259471)
               

               
               cmu (0.186393)
               

               
               sto (0.179824)
               

               
               rec (0.17307)
               

               
               nco (0.161734)
               

               
               liv (0.146284)
               

               
               csk (0.140746)
               

               
               ret (0.128733)
               

               
               bla (0.124347)

Expressed library(ies): 11 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lin (1.45603)
               

               
               tra (0.738552)
               

               
               kid (0.259471)
               

               
               cmu (0.186393)
               

               
               sto (0.179824)
               

               
               rec (0.17307)
               

               
               nco (0.161734)
               

               
               liv (0.146284)
               

               
               csk (0.140746)
               

               
               ret (0.128733)
               

               
               bla (0.124347)

	93-897, gnl\|bosTau2\|chr6 (47181902-47181111)
	93-897, gnl\|Hg17\|chr4 (70888596-70887039)

	lin (1.45603)
	tra (0.738552)
	kid (0.259471)
	cmu (0.186393)
	sto (0.179824)
	rec (0.17307)
	nco (0.161734)
	liv (0.146284)
	csk (0.140746)
	ret (0.128733)
	bla (0.124347)