Non-Coding RNA Search

Ss1.1-rlin19_d17.5

Sequence:


               
               TACGATGGCCGGTTTGGCGCCCACCAGGCTGAGCCCTAGTAGCTGAGTTCGTCCGCGTGC
ACCGCCCAGCCCGGTACCTCAGATTTGGCATTCTACACTGAAGTCATCATGAGCTTTTTC
CAACTCCTGAGGAAAAAGAAGGAACTTATTCCTTTGGTGTTTTTCATGACCGCGGCAGCG
AGTGGAGCTTCGGCTTTTGCTATATATTCCCTTGGAAAAACCGATGTGATCATTGATCGA
AAAAGAAATCCAGAGCCTTGGGAAACTGTGGATCCTAATGTACCTAGAAAGCTTATAACA
ATCAACCAAGAATGGAAGCCCATTGAAGAGTTGCAGAATGTCCGAAGGGCAACCAGATGA
CCAGTCCTCGCCTTTTTCTTCAAAGAGCACTCTATGAATCTAGTGGAAACACTTCTGCAC
AAACTAGATTCTGGATACCAGTGTGCGGAAATGCTTCTGCTACATTTTTAGGGCTTGCCC
ACGTTTTTTGAACTCTGGATGAGGAATTATAAAGGTAGTGCCATAATAACCACATAGTCC
CCAAATAAGTTTCTGTGTTTATTTTCATGTTGTAAATTTGAGTTCTGTGTATTGAAATTT
TTGTGTTTATGATACCTGAATGTTTTTCTTAAAATGTATAAAGATTTGGAAATTCGATCA
TCTACAATAAAATACTATTTGTGCAGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TACGATGGCCGGTTTGGCGCCCACCAGGCTGAGCCCTAGTAGCTGAGTTCGTCCGCGTGC
ACCGCCCAGCCCGGTACCTCAGATTTGGCATTCTACACTGAAGTCATCATGAGCTTTTTC
CAACTCCTGAGGAAAAAGAAGGAACTTATTCCTTTGGTGTTTTTCATGACCGCGGCAGCG
AGTGGAGCTTCGGCTTTTGCTATATATTCCCTTGGAAAAACCGATGTGATCATTGATCGA
AAAAGAAATCCAGAGCCTTGGGAAACTGTGGATCCTAATGTACCTAGAAAGCTTATAACA
ATCAACCAAGAATGGAAGCCCATTGAAGAGTTGCAGAATGTCCGAAGGGCAACCAGATGA
CCAGTCCTCGCCTTTTTCTTCAAAGAGCACTCTATGAATCTAGTGGAAACACTTCTGCAC
AAACTAGATTCTGGATACCAGTGTGCGGAAATGCTTCTGCTACATTTTTAGGGCTTGCCC
ACGTTTTTTGAACTCTGGATGAGGAATTATAAAGGTAGTGCCATAATAACCACATAGTCC
CCAAATAAGTTTCTGTGTTTATTTTCATGTTGTAAATTTGAGTTCTGTGTATTGAAATTT
TTGTGTTTATGATACCTGAATGTTTTTCTTAAAATGTATAAAGATTTGGAAATTCGATCA
TCTACAATAAAATACTATTTGTGCAGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|18088946|gb|AAH21173.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|18088946|gb|AAH21173.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               377-495, + strand, RNAz p=0.998015

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               377-495, + strand, RNAz p=0.998015

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_032413, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_032413, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               338-645, gnl|bosTau2|chr22 (44959129-44958828)
               

               
               338-645, gnl|Hg17|chr15 (43512484-43512775)
               

               
               338-645, gnl|Mm7|chr2 (122381603-122381885)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               338-645, gnl|bosTau2|chr22 (44959129-44958828)
               

               
               338-645, gnl|Hg17|chr15 (43512484-43512775)
               

               
               338-645, gnl|Mm7|chr2 (122381603-122381885)

Expressed library(ies): 21 entry(ies)

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Expressed library(ies): 21 entry(ies)

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               rec (3.80755)
               

               
               lin (3.20326)
               

               
               sin (2.97411)
               

               
               duo (1.38241)
               

               
               col (1.17005)
               

               
               jej (1.08814)
               

               
               nco (0.970403)
               

               
               tes (0.831255)
               

               
               cbl (0.573987)
               

               
               csk (0.562984)
               

               
               sto (0.539471)
               

               
               ski (0.440205)
               

               
               cmu (0.372787)
               

               
               nje (0.33184)
               

               
               ill (0.175593)
               

               
               cki (0.165235)
               

               
               spl (0.143184)
               

               
               cst (0.140036)
               

               
               bla (0.124347)
               

               
               tra (0.123092)
               

               
               nbm (0.0993246)

Expressed library(ies): 21 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               rec (3.80755)
               

               
               lin (3.20326)
               

               
               sin (2.97411)
               

               
               duo (1.38241)
               

               
               col (1.17005)
               

               
               jej (1.08814)
               

               
               nco (0.970403)
               

               
               tes (0.831255)
               

               
               cbl (0.573987)
               

               
               csk (0.562984)
               

               
               sto (0.539471)
               

               
               ski (0.440205)
               

               
               cmu (0.372787)
               

               
               nje (0.33184)
               

               
               ill (0.175593)
               

               
               cki (0.165235)
               

               
               spl (0.143184)
               

               
               cst (0.140036)
               

               
               bla (0.124347)
               

               
               tra (0.123092)
               

               
               nbm (0.0993246)

	338-645, gnl\|bosTau2\|chr22 (44959129-44958828)
	338-645, gnl\|Hg17\|chr15 (43512484-43512775)
	338-645, gnl\|Mm7\|chr2 (122381603-122381885)

	rec (3.80755)
	lin (3.20326)
	sin (2.97411)
	duo (1.38241)
	col (1.17005)
	jej (1.08814)
	nco (0.970403)
	tes (0.831255)
	cbl (0.573987)
	csk (0.562984)
	sto (0.539471)
	ski (0.440205)
	cmu (0.372787)
	nje (0.33184)
	ill (0.175593)
	cki (0.165235)
	spl (0.143184)
	cst (0.140036)
	bla (0.124347)
	tra (0.123092)
	nbm (0.0993246)