Ss1.1-rlin19_m18.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGTCCCCTGGGCTCTATTCCCCGTTACAGGCGAGATTAAGCCCAAAGAACAGAACCACTG ATTTAAAGTGCGACGGTTCCAGCAGATTGGAGGGAACAGAGGCAGAAATTCTGACACGGA AACATATTGAAGTTGAGGAAGAAAGAGCCAGACCGCTAGTCCCCTTGCTATCAGCCTCAG AATCCTGTGCATCTGAAAATAAGTGTTCTCAAGAGAAGCATGACGCTCAGGAAGCTTTCT CAGACCATCCTCTGCACGGGGACCCTGGGTCACAGCAGCCCTTCAGGAAATTGCAGGAAG AGCAGGAGGAGCATTCGGGCAGCAGCAGTGACCTCACAGTTTCTATAAGCGAAGATGATC TGATTTTAGAGACTCTAGAACCACAGTCAAATCCAGCTGATATGATGGAGGAAGAAGATG GAATAGAGGCCTTAAACCTAATCCACTCTGAGCAAGAAAGAGACGCCCTATCCGCTAAAA AACAGAATTGTATTGTGCAAACCGTAAGCTCTCTGGATTCAAAAAAGGAGTCCTCCACTA ACTTGCCAGCAAGAGAGCTCTCTGATCACCGTGACATTGTGAAAGAAGACCTTGAAGCCT ACGGAGCTGCCGTCCTTCACCAGCCTCCAAGACTCTCCCTGGGGGGTGGCAGCCATGAAG CCCCTGGCAGAGTTGAACAAGCCTCAGGCTTAGTGAGGACACAATTGGGTCAGCATGTTG CCACCTTGAAAGGACATGATAATTCTTCCCAAGAAGAGGTAGCGAAGCTGTCTGAAGTTT TCCCAGTCAAGAACATGGACCAGAGGATGAGGGCGGCAGCAGCACTGTGGAAGCACCTTC CAGAAGAAGATGTGGAGAGGTCGGCTGTTGTCAGTAGGAAGTCATCCTGCAGCTCACCAT CTACCCTGAATGCCAGCAGTGGAGTAAAGGATGCAGAGCCCGCCCTGTGGCTCAGCAGTG GTCCTACAAGGAAAGAAGAAGGTTCAAATGACTGCAGAGAGGAGAGTGCCGAAGAAAGCG AGGGAGCAAGGATGCCCATCACAGAAACAAAAGCCTACCAGATGCTGAAGCAGTCCACCC TTCAGGACAGCGCCCGTCAGCATGAAGCCAAATCGCAGAAGGTGGCGGCCCCTGCCTCAC AGCTGTTGGGTTTGAATGTTGGCAGCGGCACCTTCAAGACAAAGACAGCTCCCCAAATTG CTTCAGAAGCTAGTTTTTCATCCAGCGAAGGAAGTCCTTTGTCAAGGCATGAAAACAAAA AGAACCTAACTACCAATTTAAAGTCTAAAGCCTTTTGGGGTGAGTCCGATGACAGTAACT CAGACATCGAAGCTGCTTTGCGTCCCAGAAACCATAACACATCCACTGATGATTTTGATG ATTTTTATGACTTATAAACTGTAACATCTATTGGAAATAAAGTGTTTAAGCAAACTCTAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGTCCCCTGGGCTCTATTCCCCGTTACAGGCGAGATTAAGCCCAAAGAACAGAACCACTG ATTTAAAGTGCGACGGTTCCAGCAGATTGGAGGGAACAGAGGCAGAAATTCTGACACGGA AACATATTGAAGTTGAGGAAGAAAGAGCCAGACCGCTAGTCCCCTTGCTATCAGCCTCAG AATCCTGTGCATCTGAAAATAAGTGTTCTCAAGAGAAGCATGACGCTCAGGAAGCTTTCT CAGACCATCCTCTGCACGGGGACCCTGGGTCACAGCAGCCCTTCAGGAAATTGCAGGAAG AGCAGGAGGAGCATTCGGGCAGCAGCAGTGACCTCACAGTTTCTATAAGCGAAGATGATC TGATTTTAGAGACTCTAGAACCACAGTCAAATCCAGCTGATATGATGGAGGAAGAAGATG GAATAGAGGCCTTAAACCTAATCCACTCTGAGCAAGAAAGAGACGCCCTATCCGCTAAAA AACAGAATTGTATTGTGCAAACCGTAAGCTCTCTGGATTCAAAAAAGGAGTCCTCCACTA ACTTGCCAGCAAGAGAGCTCTCTGATCACCGTGACATTGTGAAAGAAGACCTTGAAGCCT ACGGAGCTGCCGTCCTTCACCAGCCTCCAAGACTCTCCCTGGGGGGTGGCAGCCATGAAG CCCCTGGCAGAGTTGAACAAGCCTCAGGCTTAGTGAGGACACAATTGGGTCAGCATGTTG CCACCTTGAAAGGACATGATAATTCTTCCCAAGAAGAGGTAGCGAAGCTGTCTGAAGTTT TCCCAGTCAAGAACATGGACCAGAGGATGAGGGCGGCAGCAGCACTGTGGAAGCACCTTC CAGAAGAAGATGTGGAGAGGTCGGCTGTTGTCAGTAGGAAGTCATCCTGCAGCTCACCAT CTACCCTGAATGCCAGCAGTGGAGTAAAGGATGCAGAGCCCGCCCTGTGGCTCAGCAGTG GTCCTACAAGGAAAGAAGAAGGTTCAAATGACTGCAGAGAGGAGAGTGCCGAAGAAAGCG AGGGAGCAAGGATGCCCATCACAGAAACAAAAGCCTACCAGATGCTGAAGCAGTCCACCC TTCAGGACAGCGCCCGTCAGCATGAAGCCAAATCGCAGAAGGTGGCGGCCCCTGCCTCAC AGCTGTTGGGTTTGAATGTTGGCAGCGGCACCTTCAAGACAAAGACAGCTCCCCAAATTG CTTCAGAAGCTAGTTTTTCATCCAGCGAAGGAAGTCCTTTGTCAAGGCATGAAAACAAAA AGAACCTAACTACCAATTTAAAGTCTAAAGCCTTTTGGGGTGAGTCCGATGACAGTAACT CAGACATCGAAGCTGCTTTGCGTCCCAGAAACCATAACACATCCACTGATGATTTTGATG ATTTTTATGACTTATAAACTGTAACATCTATTGGAAATAAAGTGTTTAAGCAAACTCTAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 30 entry(ies) | More info |
| Aligned organism(s): 30 entry(ies) | Help | Less info |
| 241-557, gnl|bosTau2|chr13 (25889421-25889102) | |
| 241-557, gnl|Hg17|chr20 (21091488-21091801) | |
| 241-557, gnl|Mm7|chr2 (146631835-146632142) | |
| 677-807, gnl|bosTau2|chr13 (25859034-25858901) | |
| 677-807, gnl|canFam2|chr24 (5216919-5216692) | |
| 677-807, gnl|dasNov1|scaffold_95667 (2713-2494) | |
| 677-807, gnl|echTel1|scaffold_308691 (38813-38615) | |
| 677-807, gnl|hg17|chr20 (21134082-21134305) | |
| 677-807, gnl|Hg17|chr20 (21134142-21134275) | |
| 677-807, gnl|mm7|chr2 (146676593-146676805) | |
| 677-807, gnl|monDom2|scaffold_1 (56892156-56892367) | |
| 677-807, gnl|oryCun1|scaffold_151719 (5237-5017) | |
| 677-807, gnl|panTro1|chr21 (21056945-21057169) | |
| 677-807, gnl|rheMac2|chr10 (54498338-54498566) | |
| 677-807, gnl|rn3|chr3 (135471114-135471324) | |
| 1289-1436, gnl|bosTau2|chr13 (25820822-25820674) | |
| 1289-1436, gnl|canFam2|chr24 (5174811-5174678) | |
| 1289-1436, gnl|danRer3|chr17 (48355757-48355639) | |
| 1289-1436, gnl|dasNov1|scaffold_158297 (3166-3304) | |
| 1289-1436, gnl|hg17|chr20 (21175105-21175238) | |
| 1289-1436, gnl|Hg17|chr20 (21175115-21175256) | |
| 1289-1436, gnl|loxAfr1|scaffold_16723 (44725-44586) | |
| 1289-1436, gnl|mm7|chr2 (146710802-146710937) | |
| 1289-1436, gnl|Mm7|chr2 (146710812-146710956) | |
| 1289-1436, gnl|monDom2|scaffold_1 (56946697-56946833) | |
| 1289-1436, gnl|oryCun1|scaffold_25091 (333-194) | |
| 1289-1436, gnl|panTro1|chr21 (21098067-21098200) | |
| 1289-1436, gnl|rheMac2|chr10 (54540502-54540635) | |
| 1289-1436, gnl|rn3|chr3 (135504405-135504540) | |
| 1289-1436, gnl|tetNig1|chrUn_random (166476591-166476744) |
| Aligned organism(s): 30 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 241-557, gnl|bosTau2|chr13 (25889421-25889102) | |
| 241-557, gnl|Hg17|chr20 (21091488-21091801) | |
| 241-557, gnl|Mm7|chr2 (146631835-146632142) | |
| 677-807, gnl|bosTau2|chr13 (25859034-25858901) | |
| 677-807, gnl|canFam2|chr24 (5216919-5216692) | |
| 677-807, gnl|dasNov1|scaffold_95667 (2713-2494) | |
| 677-807, gnl|echTel1|scaffold_308691 (38813-38615) | |
| 677-807, gnl|hg17|chr20 (21134082-21134305) | |
| 677-807, gnl|Hg17|chr20 (21134142-21134275) | |
| 677-807, gnl|mm7|chr2 (146676593-146676805) | |
| 677-807, gnl|monDom2|scaffold_1 (56892156-56892367) | |
| 677-807, gnl|oryCun1|scaffold_151719 (5237-5017) | |
| 677-807, gnl|panTro1|chr21 (21056945-21057169) | |
| 677-807, gnl|rheMac2|chr10 (54498338-54498566) | |
| 677-807, gnl|rn3|chr3 (135471114-135471324) | |
| 1289-1436, gnl|bosTau2|chr13 (25820822-25820674) | |
| 1289-1436, gnl|canFam2|chr24 (5174811-5174678) | |
| 1289-1436, gnl|danRer3|chr17 (48355757-48355639) | |
| 1289-1436, gnl|dasNov1|scaffold_158297 (3166-3304) | |
| 1289-1436, gnl|hg17|chr20 (21175105-21175238) | |
| 1289-1436, gnl|Hg17|chr20 (21175115-21175256) | |
| 1289-1436, gnl|loxAfr1|scaffold_16723 (44725-44586) | |
| 1289-1436, gnl|mm7|chr2 (146710802-146710937) | |
| 1289-1436, gnl|Mm7|chr2 (146710812-146710956) | |
| 1289-1436, gnl|monDom2|scaffold_1 (56946697-56946833) | |
| 1289-1436, gnl|oryCun1|scaffold_25091 (333-194) | |
| 1289-1436, gnl|panTro1|chr21 (21098067-21098200) | |
| 1289-1436, gnl|rheMac2|chr10 (54540502-54540635) | |
| 1289-1436, gnl|rn3|chr3 (135504405-135504540) | |
| 1289-1436, gnl|tetNig1|chrUn_random (166476591-166476744) |
| Expressed library(ies): 12 entry(ies) | More info |
| Expressed library(ies): 12 entry(ies) | Help | Less info |
| cte (0.29274) | |
| pgl (0.236967) | |
| ill (0.175593) | |
| fbs (0.175346) | |
| cki (0.165235) | |
| ski (0.146735) | |
| lin (0.145603) | |
| lnt (0.142308) | |
| cov (0.132153) | |
| ova (0.129132) | |
| eep (0.122564) | |
| ebs (0.118301) |
| Expressed library(ies): 12 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cte (0.29274) | |
| pgl (0.236967) | |
| ill (0.175593) | |
| fbs (0.175346) | |
| cki (0.165235) | |
| ski (0.146735) | |
| lin (0.145603) | |
| lnt (0.142308) | |
| cov (0.132153) | |
| ova (0.129132) | |
| eep (0.122564) | |
| ebs (0.118301) |