Ss1.1-rlin19_o15.5
|
CGGAGAGAAGCATATACATGTGCTGATTTTTCCCCCAGCCTATCAAAGATTCAATGAAAA
TTGGCAAAATGAACAAATTCCACATTCAAACACTCACTGAAATGCTTTCATAGTGCTTTA
TTTGTAAATATTTTGGATGAAATGTATTGGAGTAATATGAAAATCAGCAGGAGATGTGGG
TCCCTGCCTCATTTTCATATGCTGTGGATACATCTCTGGGAGCTTGCAGCACCCTTCTCA
AAACTCAGCTGTCATATGGGGCTCATTTGCTACTCAAACAATAGACAAATATTTAACATA
AGTGATATAATGACCTTCAGTATTTTTCTATTGAACAAGTTTAGCAACTTTTGCCATTAA
ACAGATGATTAGTTATGCAGAGTATTTAGCTTTTATAATCATTTAGTTATGACTAAAAGG
GGGGAAATTGAGCTGCATCACTGATGATGAACTTTGTGAGAAATTTTTTGTTTATCTGAC
TTTCATTCCTTCAGTATTCTTACTATAAATTTCTTTTGGAGATAATGATGAAGATTTATT
TGAAAATGTCTAAAATGTATGTATATTTTATAAATATATATTATATATATTATAGGAATA
TATATAATATATATAGACTATATATATATATATATAATATATATATATATAAAACAAACC
ATAGGTGCATTTTACTGTGGTGTATTTTCATTTGTGGAGGGAGTGCACACAGCAGGTAAT
GATGAGTATGATGATGAGTATTGCGCTGTGTGCTTTTGCAGTATAATATATAGCTCTAAA
TGTGTAAATCACTGTATATACTATATTCATTATAGGCTAGCGTGCGTGTTTTAAAGACTG
TCATTCTAGTTTATTAAAATCTGA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
CGGAGAGAAGCATATACATGTGCTGATTTTTCCCCCAGCCTATCAAAGATTCAATGAAAA
TTGGCAAAATGAACAAATTCCACATTCAAACACTCACTGAAATGCTTTCATAGTGCTTTA
TTTGTAAATATTTTGGATGAAATGTATTGGAGTAATATGAAAATCAGCAGGAGATGTGGG
TCCCTGCCTCATTTTCATATGCTGTGGATACATCTCTGGGAGCTTGCAGCACCCTTCTCA
AAACTCAGCTGTCATATGGGGCTCATTTGCTACTCAAACAATAGACAAATATTTAACATA
AGTGATATAATGACCTTCAGTATTTTTCTATTGAACAAGTTTAGCAACTTTTGCCATTAA
ACAGATGATTAGTTATGCAGAGTATTTAGCTTTTATAATCATTTAGTTATGACTAAAAGG
GGGGAAATTGAGCTGCATCACTGATGATGAACTTTGTGAGAAATTTTTTGTTTATCTGAC
TTTCATTCCTTCAGTATTCTTACTATAAATTTCTTTTGGAGATAATGATGAAGATTTATT
TGAAAATGTCTAAAATGTATGTATATTTTATAAATATATATTATATATATTATAGGAATA
TATATAATATATATAGACTATATATATATATATATAATATATATATATATAAAACAAACC
ATAGGTGCATTTTACTGTGGTGTATTTTCATTTGTGGAGGGAGTGCACACAGCAGGTAAT
GATGAGTATGATGATGAGTATTGCGCTGTGTGCTTTTGCAGTATAATATATAGCTCTAAA
TGTGTAAATCACTGTATATACTATATTCATTATAGGCTAGCGTGCGTGTTTTAAAGACTG
TCATTCTAGTTTATTAAAATCTGA
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
124-231, - strand, RNAmicro p=0.994452 |
PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro
|
124-231, - strand, RNAmicro p=0.994452 |
|
103-258, DB543453 RIKEN full-length enriched human cDNA library, hippocampus
(dbj|DB543453.1|), blast E-value=0, identity=92.31% |
|
103-258, BX327915 Homo sapiens PLACENTA COT 25-NORMALIZED Homo sapiens cDNA
(emb|BX327915.2|), blast E-value=0, identity=92.31% |
|
103-258, BX327916 Homo sapiens PLACENTA COT 25-NORMALIZED Homo sapiens cDNA
(emb|BX327916.1|), blast E-value=0, identity=92.31% |
|
103-258, qh14g06.x1 Soares_NFL_T_GBC_S1 Homo sapiens cDNA clone
(gb|AI217332.1|), blast E-value=0, identity=92.31% |
|
103-258, wx83h04.x1 NCI_CGAP_Ov38 Homo sapiens cDNA clone IMAGE
(gb|AI954529.1|), blast E-value=0, identity=92.31% |
|
103-258, UI-H-BI3-aky-d-06-0-UI.s1 NCI_CGAP_Sub5 Homo sapiens cDNA clone
(gb|AW450184.1|), blast E-value=0, identity=92.31% |
PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript
|
103-258, DB543453 RIKEN full-length enriched human cDNA library, hippocampus
(dbj|DB543453.1|), blast E-value=0, identity=92.31% |
|
103-258, BX327915 Homo sapiens PLACENTA COT 25-NORMALIZED Homo sapiens cDNA
(emb|BX327915.2|), blast E-value=0, identity=92.31% |
|
103-258, BX327916 Homo sapiens PLACENTA COT 25-NORMALIZED Homo sapiens cDNA
(emb|BX327916.1|), blast E-value=0, identity=92.31% |
|
103-258, qh14g06.x1 Soares_NFL_T_GBC_S1 Homo sapiens cDNA clone
(gb|AI217332.1|), blast E-value=0, identity=92.31% |
|
103-258, wx83h04.x1 NCI_CGAP_Ov38 Homo sapiens cDNA clone IMAGE
(gb|AI954529.1|), blast E-value=0, identity=92.31% |
|
103-258, UI-H-BI3-aky-d-06-0-UI.s1 NCI_CGAP_Sub5 Homo sapiens cDNA clone
(gb|AW450184.1|), blast E-value=0, identity=92.31% |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
gul (0.177588) |
|
lin (0.145603) |
|
ret (0.128733) |
|
gul (0.177588) |
|
lin (0.145603) |
|
ret (0.128733) |