Non-Coding RNA Search

Ss1.1-rlin21_m20.5

Sequence:


               
               GCACTATTAAAGGAATAAAGCAAAATACTATTTAAGACATGAACATTACAGACCAAAATA
TTGAAGGTATTCCCCAAGCTATGTATAATACATAGCGAAAAACTTTTAGTGATGCTGCAT
GTATTTATCCAGAAAACTGTGATTTCAGGAGAACCTAACATGCTGGTAAATATTTTGTAC
CTTTGTCCCCACTAGCTGATACTTTTTAAAATGTAACATAAATTTTAAAAAGTCTTTAAT
AAGTAACCCATAACTGAAGTGTATAATATAAAAATTAAAAGTCTAAATATGCAGCTTGTT
CTCCCCCTAAAAGTGTGCATAATTTTACTTTCCTAAGGGATGATCTAGAATATTCTTTAA
AATTTAAGAAAAAGGCAGATTGCACCATGAAGGGCTTCACTTGGGGACGTGGAAGGATTG
ATTAAATCAGCTTTTCATAGATATCATAAAAGTTTAACAACAGAAGGGGTGCAGAATTTG
GGCTTATGAAGGTCACTTTCTAAAGATTTTGTGTGCCAGCCGATAATGTTGTACACATAT
TTGAAAGACCTTTCTCAAAGAAATATTAAGCATGTTTTGTTGCTTAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCACTATTAAAGGAATAAAGCAAAATACTATTTAAGACATGAACATTACAGACCAAAATA
TTGAAGGTATTCCCCAAGCTATGTATAATACATAGCGAAAAACTTTTAGTGATGCTGCAT
GTATTTATCCAGAAAACTGTGATTTCAGGAGAACCTAACATGCTGGTAAATATTTTGTAC
CTTTGTCCCCACTAGCTGATACTTTTTAAAATGTAACATAAATTTTAAAAAGTCTTTAAT
AAGTAACCCATAACTGAAGTGTATAATATAAAAATTAAAAGTCTAAATATGCAGCTTGTT
CTCCCCCTAAAAGTGTGCATAATTTTACTTTCCTAAGGGATGATCTAGAATATTCTTTAA
AATTTAAGAAAAAGGCAGATTGCACCATGAAGGGCTTCACTTGGGGACGTGGAAGGATTG
ATTAAATCAGCTTTTCATAGATATCATAAAAGTTTAACAACAGAAGGGGTGCAGAATTTG
GGCTTATGAAGGTCACTTTCTAAAGATTTTGTGTGCCAGCCGATAATGTTGTACACATAT
TTGAAAGACCTTTCTCAAAGAAATATTAAGCATGTTTTGTTGCTTAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               38-155, + strand, RNAz p=0.671139

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               38-155, + strand, RNAz p=0.671139

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_000958, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_000958, +

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-586, gnl|bosTau2|chr20 (19867946-19868493)
               

               
               1-586, gnl|Hg17|chr5 (40728904-40729474)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-586, gnl|bosTau2|chr20 (19867946-19868493)
               

               
               1-586, gnl|Hg17|chr5 (40728904-40729474)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               spl (0.286369)
               

               
               lyg (0.266205)
               

               
               gul (0.177588)
               

               
               fty (0.17584)
               

               
               sin (0.174948)
               

               
               lin (0.145603)
               

               
               kid (0.129735)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               spl (0.286369)
               

               
               lyg (0.266205)
               

               
               gul (0.177588)
               

               
               fty (0.17584)
               

               
               sin (0.174948)
               

               
               lin (0.145603)
               

               
               kid (0.129735)

	1-586, gnl\|bosTau2\|chr20 (19867946-19868493)
	1-586, gnl\|Hg17\|chr5 (40728904-40729474)

	spl (0.286369)
	lyg (0.266205)
	gul (0.177588)
	fty (0.17584)
	sin (0.174948)
	lin (0.145603)
	kid (0.129735)