Ss1.1-rlin23_g10.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ATTTCTTTCTCTACAAGGAGTGTTAGGAGGCATGGGGAGCTCTCAAAGGCTCCCCTTTCT TTATTCTTAATACTGTGCTTCTGTGTTCCTTGGGAATGCCACTGGGCTTACGCCTCTGGT CTCTGGGAGCTGCAGTGGATGGGCATTTGTAACAGCACTATGGGACTGAGAAACATTCTC GTTGGGATGGTCCTCCTGCTCTCTGGTGCTGCCTCCTTGAAAAGTCAGGCATATTTCAAT GAGACTGGAGAACTGCCGTGCCATTTTACAAACTCGCAGAACCTAAGCCTGGATGAGCTG GTCATATTTTGGCAGGACCAGGATAACCTGGTTCTCTACGAGCTATACCGAGGCCAAGAG AAGCCTCATAATGTTAATTCCAAGTATATGGGTCGCACAAGCTTTGACCAGGCCACCTGG ACCCTGAGACTCCACAACGTTCAAATCAAGGACAAGGGCTCATATCAATGTTTCATCCAT CATAAAGGGCCGCATGGACTTGTTCCTATCCACCAGATGAGTTCTGACCTATCAGTGCTT GCTAACTTCAGTCAACCTGAAATAAACCTACTTACTAATCACACAGAAAATTCTGTCATA AATTTGACCTGCTCATCTACACAAGGCTACCCAGAACCCCAGAGGATGTATATGTTGCTA AATACGAAGAATTCAACCACTGAGCATGATGCTGACATGAAGAAATCTCAAAATAACATC ACGGAACTCTACAATGTATCAATCAGGGTGTCTCTTCCCATCCCTCCCGAGACAAATGTG AGCATCGTCTGTGTCCTGCAACTTGAGCCAAGCAAGACACTGCTTTTCTCCCTACCTTGT AATATAGATGCAAAGCCACCTGTGCAACCCCCTGTCCCAGACCACATCCTCTGGATTGCA GCTCTACTTGTAACAGTGGTCGTTGTGTGTGGGATGGTGTCCTTTGTAACACTAAGGAAA AGGAAGAAGAAGCAGCCTGGCCCCTCTAATGAATGTGGTGAAACCATCAAAATGAACAGG AAGGCGAGTGAACAAACTAAGAACAGAAGTCCATGAACGATCTGATGATGCCCAGTGTGA TGTTAATATTTTAAAGACAGCCTCAGATGACAACAGTACTACAGATTTTTAATTAAAGAG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ATTTCTTTCTCTACAAGGAGTGTTAGGAGGCATGGGGAGCTCTCAAAGGCTCCCCTTTCT TTATTCTTAATACTGTGCTTCTGTGTTCCTTGGGAATGCCACTGGGCTTACGCCTCTGGT CTCTGGGAGCTGCAGTGGATGGGCATTTGTAACAGCACTATGGGACTGAGAAACATTCTC GTTGGGATGGTCCTCCTGCTCTCTGGTGCTGCCTCCTTGAAAAGTCAGGCATATTTCAAT GAGACTGGAGAACTGCCGTGCCATTTTACAAACTCGCAGAACCTAAGCCTGGATGAGCTG GTCATATTTTGGCAGGACCAGGATAACCTGGTTCTCTACGAGCTATACCGAGGCCAAGAG AAGCCTCATAATGTTAATTCCAAGTATATGGGTCGCACAAGCTTTGACCAGGCCACCTGG ACCCTGAGACTCCACAACGTTCAAATCAAGGACAAGGGCTCATATCAATGTTTCATCCAT CATAAAGGGCCGCATGGACTTGTTCCTATCCACCAGATGAGTTCTGACCTATCAGTGCTT GCTAACTTCAGTCAACCTGAAATAAACCTACTTACTAATCACACAGAAAATTCTGTCATA AATTTGACCTGCTCATCTACACAAGGCTACCCAGAACCCCAGAGGATGTATATGTTGCTA AATACGAAGAATTCAACCACTGAGCATGATGCTGACATGAAGAAATCTCAAAATAACATC ACGGAACTCTACAATGTATCAATCAGGGTGTCTCTTCCCATCCCTCCCGAGACAAATGTG AGCATCGTCTGTGTCCTGCAACTTGAGCCAAGCAAGACACTGCTTTTCTCCCTACCTTGT AATATAGATGCAAAGCCACCTGTGCAACCCCCTGTCCCAGACCACATCCTCTGGATTGCA GCTCTACTTGTAACAGTGGTCGTTGTGTGTGGGATGGTGTCCTTTGTAACACTAAGGAAA AGGAAGAAGAAGCAGCCTGGCCCCTCTAATGAATGTGGTGAAACCATCAAAATGAACAGG AAGGCGAGTGAACAAACTAAGAACAGAAGTCCATGAACGATCTGATGATGCCCAGTGTGA TGTTAATATTTTAAAGACAGCCTCAGATGACAACAGTACTACAGATTTTTAATTAAAGAG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 1-129, + strand, RNAz p=0.985195 | |
| 280-396, - strand, RNAz p=0.800324 | |
| 282-401, + strand, RNAz p=0.668665 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1-129, + strand, RNAz p=0.985195 | |
| 280-396, - strand, RNAz p=0.800324 | |
| 282-401, + strand, RNAz p=0.668665 |
| Aligned organism(s): 38 entry(ies) | More info |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
| 1-155, gnl|bosTau2|chr1 (41263033-41262880) | |
| 1-155, gnl|canFam2|chr33 (28319966-28320288) | |
| 1-155, gnl|dasNov1|scaffold_10179 (1791-2090) | |
| 1-155, gnl|echTel1|scaffold_282580 (54785-54447) | |
| 1-155, gnl|hg17|chr3 (123279407-123279730) | |
| 1-155, gnl|Hg17|chr3 (123279425-123279582) | |
| 1-155, gnl|mm7|chr16 (36351132-36350790) | |
| 1-155, gnl|Mm7|chr16 (36351115-36350935) | |
| 1-155, gnl|oryCun1|scaffold_198124 (84971-85295) | |
| 1-155, gnl|panTro1|chr2 (124970468-124970791) | |
| 1-155, gnl|rheMac2|chr2 (42080069-42080391) | |
| 1-155, gnl|rn3|chr11 (66241755-66241413) | |
| 202-544, gnl|bosTau2|chr1 (39733272-39732930) | |
| 202-544, gnl|canFam2|chr33 (28342508-28343234) | |
| 202-544, gnl|dasNov1|scaffold_192607 (2363-1676) | |
| 202-544, gnl|echTel1|scaffold_289912 (53123-52437) | |
| 202-544, gnl|hg17|chr3 (123304972-123305705) | |
| 202-544, gnl|Hg17|chr3 (123305046-123305387) | |
| 202-544, gnl|loxAfr1|scaffold_75639 (2748-3464) | |
| 202-544, gnl|mm7|chr16 (36329489-36328799) | |
| 202-544, gnl|Mm7|chr16 (36329422-36329080) | |
| 202-544, gnl|monDom2|scaffold_24 (19313032-19313689) | |
| 202-544, gnl|oryCun1|scaffold_145570 (94-823) | |
| 202-544, gnl|panTro1|chr2 (124996267-124997000) | |
| 202-544, gnl|rheMac2|chr2 (42103072-42103806) | |
| 202-544, gnl|rn3|chr11 (66289062-66288366) | |
| 845-1001, gnl|bosTau2|chr1 (39727904-39727751) | |
| 845-1001, gnl|canFam2|chr33 (28348148-28348418) | |
| 845-1001, gnl|dasNov1|scaffold_10179 (38537-38818) | |
| 845-1001, gnl|echTel1|scaffold_289912 (48604-48326) | |
| 845-1001, gnl|hg17|chr3 (123310710-123310980) | |
| 845-1001, gnl|Hg17|chr3 (123310799-123310949) | |
| 845-1001, gnl|loxAfr1|scaffold_33657 (23515-23230) | |
| 845-1001, gnl|mm7|chr16 (36323832-36323581) | |
| 845-1001, gnl|oryCun1|scaffold_212815 (28681-28934) | |
| 845-1001, gnl|panTro1|chr2 (125001993-125002263) | |
| 845-1001, gnl|rheMac2|chr2 (42108770-42109040) | |
| 845-1001, gnl|rn3|chr11 (66283380-66283119) |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-155, gnl|bosTau2|chr1 (41263033-41262880) | |
| 1-155, gnl|canFam2|chr33 (28319966-28320288) | |
| 1-155, gnl|dasNov1|scaffold_10179 (1791-2090) | |
| 1-155, gnl|echTel1|scaffold_282580 (54785-54447) | |
| 1-155, gnl|hg17|chr3 (123279407-123279730) | |
| 1-155, gnl|Hg17|chr3 (123279425-123279582) | |
| 1-155, gnl|mm7|chr16 (36351132-36350790) | |
| 1-155, gnl|Mm7|chr16 (36351115-36350935) | |
| 1-155, gnl|oryCun1|scaffold_198124 (84971-85295) | |
| 1-155, gnl|panTro1|chr2 (124970468-124970791) | |
| 1-155, gnl|rheMac2|chr2 (42080069-42080391) | |
| 1-155, gnl|rn3|chr11 (66241755-66241413) | |
| 202-544, gnl|bosTau2|chr1 (39733272-39732930) | |
| 202-544, gnl|canFam2|chr33 (28342508-28343234) | |
| 202-544, gnl|dasNov1|scaffold_192607 (2363-1676) | |
| 202-544, gnl|echTel1|scaffold_289912 (53123-52437) | |
| 202-544, gnl|hg17|chr3 (123304972-123305705) | |
| 202-544, gnl|Hg17|chr3 (123305046-123305387) | |
| 202-544, gnl|loxAfr1|scaffold_75639 (2748-3464) | |
| 202-544, gnl|mm7|chr16 (36329489-36328799) | |
| 202-544, gnl|Mm7|chr16 (36329422-36329080) | |
| 202-544, gnl|monDom2|scaffold_24 (19313032-19313689) | |
| 202-544, gnl|oryCun1|scaffold_145570 (94-823) | |
| 202-544, gnl|panTro1|chr2 (124996267-124997000) | |
| 202-544, gnl|rheMac2|chr2 (42103072-42103806) | |
| 202-544, gnl|rn3|chr11 (66289062-66288366) | |
| 845-1001, gnl|bosTau2|chr1 (39727904-39727751) | |
| 845-1001, gnl|canFam2|chr33 (28348148-28348418) | |
| 845-1001, gnl|dasNov1|scaffold_10179 (38537-38818) | |
| 845-1001, gnl|echTel1|scaffold_289912 (48604-48326) | |
| 845-1001, gnl|hg17|chr3 (123310710-123310980) | |
| 845-1001, gnl|Hg17|chr3 (123310799-123310949) | |
| 845-1001, gnl|loxAfr1|scaffold_33657 (23515-23230) | |
| 845-1001, gnl|mm7|chr16 (36323832-36323581) | |
| 845-1001, gnl|oryCun1|scaffold_212815 (28681-28934) | |
| 845-1001, gnl|panTro1|chr2 (125001993-125002263) | |
| 845-1001, gnl|rheMac2|chr2 (42108770-42109040) | |
| 845-1001, gnl|rn3|chr11 (66283380-66283119) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| sto (0.179824) | |
| lin (0.145603) |