Ss1.1-rlin23_o21.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ACCGCGCAGGCTCGCAGCCGAGACCGTTATGGCTGCCGCCGCCCCTAGCAGGATGAGAGG CGCTGTACAAGCGAAGCTGCCGCCCAAGCCAGGCATCCAGGTTCCCACGGGGCTGGCGCG GCCGCTGGTCCTGGAGGTCCTGCTTGCGTCTGTCCTCATATCCAGCGCTTTATCACAGAC TCACGCGTTGAGCCAGCCTACACTCCGGCCGAATGTTTCTACTCCAGATAGGAAAGCTTT AACGTCTGAAAACCAAACCGAACCTTCTCTTTCCCAAGTCAGTACCACCCTCGCTCCCGC GACTCGCACAGAGAAAAGCAGAGTGGCGTCCGTGTCCCCTTATTCCTCGCCTGCGACTTC TCTGTCCCAAGAGGAAGCCGACAACAACGAGGACCCCAGCATAGAGGAGGAGGATCTCCT GACCCTGAACAGTTCTCCGCCCACTGCCAGAGACACGCTGGACAACGGCGATTACGGAGA ACCGGACTACGACTGGACCGCCAGTCCCAGGGACGAGGAGTCCAACGAGGCCTTGGAAGA AAACAGGAGCTACATGGAGATTGAACAGTCAGTGCGCTCTTTCAAGACCCCGCCCTCCAA TGTAGAAGAGGAAGATAGCCATTTCTTTTTCCATCTTATTATTTTTGCCTTTTGTATTGC TGTTATTTATGTTACATATCACAACAAAAGGAAGATTTTCCTTCTGGTTCAAAGCAGGAA ATGGCGTGATGGTCTTTGTTCTAAAACAGTGGAATATCATCGTCTAGACCAGAATGTGAA TGAGGCAATGCCTTCTCTGAAGATTACCAATGATTATATATTTTAAAGCACTGTGATTTG AGTTTGCTTATTATGTAATTTTATTTGCTTGACTTTTTATATGATATTGTGCAGATGTTT GCCATTGGCAGTTAGTACTTAAGTGAGAGGTGGGCCTCTCTTTATTTTGCCTCGGTGCTT TGGTAATGAAGTATCACAAACAAGGAGTCTATAATTTTTTATCTACATTTTTAGAGGTGA ACTCAATCAGGTGTCCAAAACGTGGAGCTAAGCGTTACCTGTTCGTTTTTATTGTTTTAA ATTTCTTTACTGTACTTCTTCTGGAAGTGTTGGTATGCTCCTTTTAAAGATCCTAGACTT GTAAGTTCTAACATATCTGATTGCTGGCTCAAATTCTCTTTCTGCCACCCAGATGCTGTT TCTTAAGCACACATTTCTTTGTGCTCCCAAACTGTAATTTACAAGGATGTATGTCAAAAT GCTTTGCATATAAGTAACATTTTTTTCTTCCAGGAAGGTTACTTTAGATATTTTTGGATA ATTTATAGGTAATTTATTATTGCTCATTCTGGCCACAGTTTCAGGCAACCCATTAATAAA TGTGTCTAGAAAATCTGGCGCTAGAGACTGCAGTTTGCAATGGACGTAAATAAAATGTTA TATGGAAAACATTTTTTGGGTTGAATTACTGAGCTAAATTGAGGGTTAGAAATCGTGGTA AAATATTAAATGCTCACAATTGCTTTTAGTTAGCAATTGATTGTAGCACGGGTTCCTCTA AGTTTGAATAAATTTTAGGAGCCATTGTCACTTTCAAATTAAAACTATGCCCGAACGAAG TTGTTTGTATACCTAAAGGATATATGTGTGCACTGACTCGTTCTCCTCTTGTATTGGTTT TGTTTTCTTCTTTTTTTTTTAATTACGACTGGAAATTATTTACTGTATTTAATTTTAGCC TGTCTTTCTAGCATAAGAAATTGATCAGTATGTAAATATGTGATTTGAACCATGGGTGAC TTACAAGTGTCACCACAACTTTTTAAAAAACATAACCCTCATACATGTTAAACGCCGCTC ACAAAGGCTGGTGAGCCAGTGGGCATGTGCTTCGTGTAGAGATGGAAGAGGCAGGACAAT CTGTCATTTCTCTCGAGTGGACAATTCACTGTTACAGTAAGGAAGGGAAGCACAATGGAA ATACACCTGAACTGTTTTATTGCAGTAATTTTTTTCATATCTGGAATTGTTTATTTCATA TTTTGAATAAGATTTTAAAAATAAATGGCAAAGGTATAAGTCCAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ACCGCGCAGGCTCGCAGCCGAGACCGTTATGGCTGCCGCCGCCCCTAGCAGGATGAGAGG CGCTGTACAAGCGAAGCTGCCGCCCAAGCCAGGCATCCAGGTTCCCACGGGGCTGGCGCG GCCGCTGGTCCTGGAGGTCCTGCTTGCGTCTGTCCTCATATCCAGCGCTTTATCACAGAC TCACGCGTTGAGCCAGCCTACACTCCGGCCGAATGTTTCTACTCCAGATAGGAAAGCTTT AACGTCTGAAAACCAAACCGAACCTTCTCTTTCCCAAGTCAGTACCACCCTCGCTCCCGC GACTCGCACAGAGAAAAGCAGAGTGGCGTCCGTGTCCCCTTATTCCTCGCCTGCGACTTC TCTGTCCCAAGAGGAAGCCGACAACAACGAGGACCCCAGCATAGAGGAGGAGGATCTCCT GACCCTGAACAGTTCTCCGCCCACTGCCAGAGACACGCTGGACAACGGCGATTACGGAGA ACCGGACTACGACTGGACCGCCAGTCCCAGGGACGAGGAGTCCAACGAGGCCTTGGAAGA AAACAGGAGCTACATGGAGATTGAACAGTCAGTGCGCTCTTTCAAGACCCCGCCCTCCAA TGTAGAAGAGGAAGATAGCCATTTCTTTTTCCATCTTATTATTTTTGCCTTTTGTATTGC TGTTATTTATGTTACATATCACAACAAAAGGAAGATTTTCCTTCTGGTTCAAAGCAGGAA ATGGCGTGATGGTCTTTGTTCTAAAACAGTGGAATATCATCGTCTAGACCAGAATGTGAA TGAGGCAATGCCTTCTCTGAAGATTACCAATGATTATATATTTTAAAGCACTGTGATTTG AGTTTGCTTATTATGTAATTTTATTTGCTTGACTTTTTATATGATATTGTGCAGATGTTT GCCATTGGCAGTTAGTACTTAAGTGAGAGGTGGGCCTCTCTTTATTTTGCCTCGGTGCTT TGGTAATGAAGTATCACAAACAAGGAGTCTATAATTTTTTATCTACATTTTTAGAGGTGA ACTCAATCAGGTGTCCAAAACGTGGAGCTAAGCGTTACCTGTTCGTTTTTATTGTTTTAA ATTTCTTTACTGTACTTCTTCTGGAAGTGTTGGTATGCTCCTTTTAAAGATCCTAGACTT GTAAGTTCTAACATATCTGATTGCTGGCTCAAATTCTCTTTCTGCCACCCAGATGCTGTT TCTTAAGCACACATTTCTTTGTGCTCCCAAACTGTAATTTACAAGGATGTATGTCAAAAT GCTTTGCATATAAGTAACATTTTTTTCTTCCAGGAAGGTTACTTTAGATATTTTTGGATA ATTTATAGGTAATTTATTATTGCTCATTCTGGCCACAGTTTCAGGCAACCCATTAATAAA TGTGTCTAGAAAATCTGGCGCTAGAGACTGCAGTTTGCAATGGACGTAAATAAAATGTTA TATGGAAAACATTTTTTGGGTTGAATTACTGAGCTAAATTGAGGGTTAGAAATCGTGGTA AAATATTAAATGCTCACAATTGCTTTTAGTTAGCAATTGATTGTAGCACGGGTTCCTCTA AGTTTGAATAAATTTTAGGAGCCATTGTCACTTTCAAATTAAAACTATGCCCGAACGAAG TTGTTTGTATACCTAAAGGATATATGTGTGCACTGACTCGTTCTCCTCTTGTATTGGTTT TGTTTTCTTCTTTTTTTTTTAATTACGACTGGAAATTATTTACTGTATTTAATTTTAGCC TGTCTTTCTAGCATAAGAAATTGATCAGTATGTAAATATGTGATTTGAACCATGGGTGAC TTACAAGTGTCACCACAACTTTTTAAAAAACATAACCCTCATACATGTTAAACGCCGCTC ACAAAGGCTGGTGAGCCAGTGGGCATGTGCTTCGTGTAGAGATGGAAGAGGCAGGACAAT CTGTCATTTCTCTCGAGTGGACAATTCACTGTTACAGTAAGGAAGGGAAGCACAATGGAA ATACACCTGAACTGTTTTATTGCAGTAATTTTTTTCATATCTGGAATTGTTTATTTCATA TTTTGAATAAGATTTTAAAAATAAATGGCAAAGGTATAAGTCCAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 852-970, + strand, RNAz p=0.595303 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 852-970, + strand, RNAz p=0.595303 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 5' of NM_020199, + |
| Aligned organism(s): 31 entry(ies) | More info |
| Aligned organism(s): 31 entry(ies) | Help | Less info |
| 1-165, gnl|bosTau2|chr7 (31005112-31005276) | |
| 1-165, gnl|canFam2|chr11 (25200793-25200929) | |
| 1-165, gnl|canFam2|chr11 (25200650-25201029) | |
| 1-165, gnl|dasNov1|scaffold_16503 (15810-15426) | |
| 1-165, gnl|dasNov1|scaffold_65033 (501-378) | |
| 1-165, gnl|echTel1|scaffold_296808 (3990-4105) | |
| 1-165, gnl|echTel1|scaffold_296808 (3856-4203) | |
| 1-165, gnl|hg17|chr1 (100510067-100510203) | |
| 1-165, gnl|hg17|chr5 (133331896-133332272) | |
| 1-165, gnl|Hg17|chr5 (133332202-133332038) | |
| 1-165, gnl|mm7|chr11 (52353351-52353217) | |
| 1-165, gnl|mm7|chr11 (52353460-52353117) | |
| 1-165, gnl|Mm7|chr11 (52353196-52353358) | |
| 1-165, gnl|panTro1|chr1_random (61862-61726) | |
| 1-165, gnl|panTro1|chr4 (139668996-139669376) | |
| 1-165, gnl|rheMac2|chr6 (130372928-130373064) | |
| 1-165, gnl|rheMac2|chr6 (130372779-130373152) | |
| 1-165, gnl|rn3|chr10 (37834166-37834032) | |
| 1-165, gnl|rn3|chr10 (37834275-37833933) | |
| 282-602, gnl|bosTau2|chr16 (13323091-13322777) | |
| 282-602, gnl|Hg17|chr1 (219243587-219243897) | |
| 693-1565, gnl|bosTau2|chr7 (31016217-31017093) | |
| 693-1565, gnl|Hg17|chr5 (133320582-133319697) | |
| 693-1565, gnl|Mm7|chr11 (52363700-52364922) | |
| 694-1053, gnl|bosTau2|chr16 (13322777-13322418) | |
| 694-1053, gnl|Hg17|chr1 (219243897-219244299) | |
| 694-1053, gnl|Mm7|chr11 (52363703-52364068) | |
| 1240-1544, gnl|bosTau2|chr16 (13321970-13321650) | |
| 1240-1544, gnl|Hg17|chr1 (219244481-219244766) | |
| 1748-1962, gnl|bosTau2|chrX (37473108-37473314) | |
| 1748-1962, gnl|Hg17|chr5 (133319424-133319218) |
| Aligned organism(s): 31 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-165, gnl|bosTau2|chr7 (31005112-31005276) | |
| 1-165, gnl|canFam2|chr11 (25200793-25200929) | |
| 1-165, gnl|canFam2|chr11 (25200650-25201029) | |
| 1-165, gnl|dasNov1|scaffold_16503 (15810-15426) | |
| 1-165, gnl|dasNov1|scaffold_65033 (501-378) | |
| 1-165, gnl|echTel1|scaffold_296808 (3990-4105) | |
| 1-165, gnl|echTel1|scaffold_296808 (3856-4203) | |
| 1-165, gnl|hg17|chr1 (100510067-100510203) | |
| 1-165, gnl|hg17|chr5 (133331896-133332272) | |
| 1-165, gnl|Hg17|chr5 (133332202-133332038) | |
| 1-165, gnl|mm7|chr11 (52353351-52353217) | |
| 1-165, gnl|mm7|chr11 (52353460-52353117) | |
| 1-165, gnl|Mm7|chr11 (52353196-52353358) | |
| 1-165, gnl|panTro1|chr1_random (61862-61726) | |
| 1-165, gnl|panTro1|chr4 (139668996-139669376) | |
| 1-165, gnl|rheMac2|chr6 (130372928-130373064) | |
| 1-165, gnl|rheMac2|chr6 (130372779-130373152) | |
| 1-165, gnl|rn3|chr10 (37834166-37834032) | |
| 1-165, gnl|rn3|chr10 (37834275-37833933) | |
| 282-602, gnl|bosTau2|chr16 (13323091-13322777) | |
| 282-602, gnl|Hg17|chr1 (219243587-219243897) | |
| 693-1565, gnl|bosTau2|chr7 (31016217-31017093) | |
| 693-1565, gnl|Hg17|chr5 (133320582-133319697) | |
| 693-1565, gnl|Mm7|chr11 (52363700-52364922) | |
| 694-1053, gnl|bosTau2|chr16 (13322777-13322418) | |
| 694-1053, gnl|Hg17|chr1 (219243897-219244299) | |
| 694-1053, gnl|Mm7|chr11 (52363703-52364068) | |
| 1240-1544, gnl|bosTau2|chr16 (13321970-13321650) | |
| 1240-1544, gnl|Hg17|chr1 (219244481-219244766) | |
| 1748-1962, gnl|bosTau2|chrX (37473108-37473314) | |
| 1748-1962, gnl|Hg17|chr5 (133319424-133319218) |
| Expressed library(ies): 35 entry(ies) | More info |
| Expressed library(ies): 35 entry(ies) | Help | Less info |
| lin (0.728014) | |
| ret (0.643666) | |
| ova (0.516529) | |
| cbe (0.478469) | |
| spl (0.429553) | |
| nje (0.33184) | |
| sme (0.305437) | |
| liv (0.292569) | |
| pla (0.267344) | |
| sug (0.254582) | |
| mas (0.210305) | |
| tes (0.207814) | |
| hea (0.204499) | |
| eje (0.197668) | |
| aor (0.195274) | |
| gul (0.177588) | |
| ill (0.175593) | |
| sin (0.174948) | |
| rec (0.17307) | |
| cje (0.165235) | |
| nco (0.161734) | |
| isp (0.150376) | |
| ski (0.146735) | |
| nca (0.136874) | |
| nmm (0.132802) | |
| cov (0.132153) | |
| ese (0.126502) | |
| bla (0.124347) | |
| tra (0.123092) | |
| cly (0.120642) | |
| ecc (0.115035) | |
| cbl (0.114797) | |
| jca (0.11396) | |
| spc (0.113366) | |
| cty (0.10408) |
| Expressed library(ies): 35 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| lin (0.728014) | |
| ret (0.643666) | |
| ova (0.516529) | |
| cbe (0.478469) | |
| spl (0.429553) | |
| nje (0.33184) | |
| sme (0.305437) | |
| liv (0.292569) | |
| pla (0.267344) | |
| sug (0.254582) | |
| mas (0.210305) | |
| tes (0.207814) | |
| hea (0.204499) | |
| eje (0.197668) | |
| aor (0.195274) | |
| gul (0.177588) | |
| ill (0.175593) | |
| sin (0.174948) | |
| rec (0.17307) | |
| cje (0.165235) | |
| nco (0.161734) | |
| isp (0.150376) | |
| ski (0.146735) | |
| nca (0.136874) | |
| nmm (0.132802) | |
| cov (0.132153) | |
| ese (0.126502) | |
| bla (0.124347) | |
| tra (0.123092) | |
| cly (0.120642) | |
| ecc (0.115035) | |
| cbl (0.114797) | |
| jca (0.11396) | |
| spc (0.113366) | |
| cty (0.10408) |