Ss1.1-rlin24_p17.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTGAATATCATGAAAGACAGATTCAAGTACTCAAAACTATCATCGAAGAGAAGAAATCAA ATTTTAATGCAGATTTAACTATAAAATTCACACCTACCGAAGCAATTGAACAGCTGAAAA GTAAAAATGTAGAACTTGCCAACGAAGAAAACTCAAATCCTATGAATAACAAGGCTCACT TCCGATTTACATATTCCAAAACGGAAACCTACAAACTGTTGTTGTCATATTCTTCTAAGA AGGAAAAAATATTCCTGCATGTCAAAGGAGTAATTCACCTGGGAAGATTTGTGATGAGAA AGCGGGATGTCATGCTGACAAAAACTTTCTTGGATGATGTAAAGTATCTGCCAAGTACCT ATGAAAAGGGAGAATATTTTGCATTTTTGGAAACCTATGGAACCCACTACAGTAGCTCTG GGTCTCTGGGAGGACTCTATGAACTAATATATGTTCTGGATAAAGCTACCATGACTGAGA AAGGTATTGAACTACGGGATGTACACAGATGCCTTGGGTTTAATCTGGATTTATCTCTGA ATTTTGGAGTTGAAATCAAAGGAAAGATTGATTCAGAAAATTGCTTAAAGAGGGGTGACG GTAAAACTGAAAACATCATGAATGACGACTTCATAGATGATGTTATTTCATTCATAAGAG GAGGAACCAGAAAATACGCAACTGAACTGAAAGAGAAGCTTCTCAAAGGAGCCAAAATGA TTAACGTGACTGACTTTGTAAACTGGGCCTCTTCCTTAAATGATGCTCCGGTGCTCATAA ATCAAAAACTGTCTCCGATATATGATCTGATTCCAGTGAAACTAAATGATGCACATCTAA AGAGACAAAATTTGGAAAGAGCCATTGAAGACTACATCAATGAATTCAATGTAAGAAAAT GCCAACTGTGCCAGAATGGAGGGACAGTGATTCTGCTGGATGGACAGTGTTTGTGTTCCT GCCCAAACAAATTTCAGGGAATTGCTTGTGAAATCCCAAAATAGAAAATCTCTGAAGACC AGCCTGAAGCACTCAATGACAAGATCAACTGGAATCTAAAGCATGATGATGTTGACCTTT GCTGACCCTCACGACTTCAATGAACTAAAGCTTGGACTCAGTCAACTGCCCCTTCATCAA TATACATCTACCCTTAGCTTAAAACTTCCCCAATTTTGTTCTTCTGCTTTGGAAAAAAAA CCTCTGGTCTTCTCTTTACTTGCTACAAGTAATAAATCCTTCCTTTGCTAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTGAATATCATGAAAGACAGATTCAAGTACTCAAAACTATCATCGAAGAGAAGAAATCAA ATTTTAATGCAGATTTAACTATAAAATTCACACCTACCGAAGCAATTGAACAGCTGAAAA GTAAAAATGTAGAACTTGCCAACGAAGAAAACTCAAATCCTATGAATAACAAGGCTCACT TCCGATTTACATATTCCAAAACGGAAACCTACAAACTGTTGTTGTCATATTCTTCTAAGA AGGAAAAAATATTCCTGCATGTCAAAGGAGTAATTCACCTGGGAAGATTTGTGATGAGAA AGCGGGATGTCATGCTGACAAAAACTTTCTTGGATGATGTAAAGTATCTGCCAAGTACCT ATGAAAAGGGAGAATATTTTGCATTTTTGGAAACCTATGGAACCCACTACAGTAGCTCTG GGTCTCTGGGAGGACTCTATGAACTAATATATGTTCTGGATAAAGCTACCATGACTGAGA AAGGTATTGAACTACGGGATGTACACAGATGCCTTGGGTTTAATCTGGATTTATCTCTGA ATTTTGGAGTTGAAATCAAAGGAAAGATTGATTCAGAAAATTGCTTAAAGAGGGGTGACG GTAAAACTGAAAACATCATGAATGACGACTTCATAGATGATGTTATTTCATTCATAAGAG GAGGAACCAGAAAATACGCAACTGAACTGAAAGAGAAGCTTCTCAAAGGAGCCAAAATGA TTAACGTGACTGACTTTGTAAACTGGGCCTCTTCCTTAAATGATGCTCCGGTGCTCATAA ATCAAAAACTGTCTCCGATATATGATCTGATTCCAGTGAAACTAAATGATGCACATCTAA AGAGACAAAATTTGGAAAGAGCCATTGAAGACTACATCAATGAATTCAATGTAAGAAAAT GCCAACTGTGCCAGAATGGAGGGACAGTGATTCTGCTGGATGGACAGTGTTTGTGTTCCT GCCCAAACAAATTTCAGGGAATTGCTTGTGAAATCCCAAAATAGAAAATCTCTGAAGACC AGCCTGAAGCACTCAATGACAAGATCAACTGGAATCTAAAGCATGATGATGTTGACCTTT GCTGACCCTCACGACTTCAATGAACTAAAGCTTGGACTCAGTCAACTGCCCCTTCATCAA TATACATCTACCCTTAGCTTAAAACTTCCCCAATTTTGTTCTTCTGCTTTGGAAAAAAAA CCTCTGGTCTTCTCTTTACTTGCTACAAGTAATAAATCCTTCCTTTGCTAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 34 entry(ies) | More info |
| Aligned organism(s): 34 entry(ies) | Help | Less info |
| 231-487, gnl|bosTau2|chr20 (21417498-21417242) | |
| 231-487, gnl|canFam2|chr4 (72899464-72899178) | |
| 231-487, gnl|danRer3|chr5 (27587206-27587482) | |
| 231-487, gnl|dasNov1|scaffold_317 (49915-49628) | |
| 231-487, gnl|echTel1|scaffold_276349 (1462-1166) | |
| 231-487, gnl|fr1|chrUn (303272859-303273137) | |
| 231-487, gnl|hg17|chr5 (39346957-39347243) | |
| 231-487, gnl|Hg17|chr5 (39347248-39346992) | |
| 231-487, gnl|loxAfr1|scaffold_148254 (781-510) | |
| 231-487, gnl|mm7|chr15 (6313896-6313610) | |
| 231-487, gnl|Mm7|chr15 (6313603-6313859) | |
| 231-487, gnl|monDom2|scaffold_20 (32240023-32239720) | |
| 231-487, gnl|oryCun1|scaffold_201173 (183025-183310) | |
| 231-487, gnl|panTro1|chr4 (77377380-77377094) | |
| 231-487, gnl|rheMac2|chr6 (39136879-39137165) | |
| 231-487, gnl|rn3|chr2 (55708279-55707993) | |
| 627-788, gnl|bosTau2|chr20 (21413541-21413380) | |
| 627-788, gnl|canFam2|chr4 (72904169-72903948) | |
| 627-788, gnl|dasNov1|scaffold_317 (54373-54152) | |
| 627-788, gnl|echTel1|scaffold_26710 (1374-1164) | |
| 627-788, gnl|fr1|chrUn (303272353-303272553) | |
| 627-788, gnl|hg17|chr5 (39342456-39342676) | |
| 627-788, gnl|Hg17|chr5 (39342634-39342476) | |
| 627-788, gnl|loxAfr1|scaffold_148254 (4373-4152) | |
| 627-788, gnl|mm7|chr15 (6318553-6318330) | |
| 627-788, gnl|Mm7|chr15 (6318372-6318533) | |
| 627-788, gnl|monDom2|scaffold_20 (32257386-32257170) | |
| 627-788, gnl|oryCun1|scaffold_201173 (177217-177438) | |
| 627-788, gnl|panTro1|chr4 (77381880-77381660) | |
| 627-788, gnl|rheMac2|chr6 (39132383-39132603) | |
| 627-788, gnl|rn3|chr2 (55713249-55713026) | |
| 1006-1245, gnl|bosTau2|chr5 (47434364-47434602) | |
| 1012-1163, gnl|bosTau2|chr16 (19039471-19039315) | |
| 1015-1122, gnl|bosTau2|chr10 (31075065-31074957) |
| Aligned organism(s): 34 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 231-487, gnl|bosTau2|chr20 (21417498-21417242) | |
| 231-487, gnl|canFam2|chr4 (72899464-72899178) | |
| 231-487, gnl|danRer3|chr5 (27587206-27587482) | |
| 231-487, gnl|dasNov1|scaffold_317 (49915-49628) | |
| 231-487, gnl|echTel1|scaffold_276349 (1462-1166) | |
| 231-487, gnl|fr1|chrUn (303272859-303273137) | |
| 231-487, gnl|hg17|chr5 (39346957-39347243) | |
| 231-487, gnl|Hg17|chr5 (39347248-39346992) | |
| 231-487, gnl|loxAfr1|scaffold_148254 (781-510) | |
| 231-487, gnl|mm7|chr15 (6313896-6313610) | |
| 231-487, gnl|Mm7|chr15 (6313603-6313859) | |
| 231-487, gnl|monDom2|scaffold_20 (32240023-32239720) | |
| 231-487, gnl|oryCun1|scaffold_201173 (183025-183310) | |
| 231-487, gnl|panTro1|chr4 (77377380-77377094) | |
| 231-487, gnl|rheMac2|chr6 (39136879-39137165) | |
| 231-487, gnl|rn3|chr2 (55708279-55707993) | |
| 627-788, gnl|bosTau2|chr20 (21413541-21413380) | |
| 627-788, gnl|canFam2|chr4 (72904169-72903948) | |
| 627-788, gnl|dasNov1|scaffold_317 (54373-54152) | |
| 627-788, gnl|echTel1|scaffold_26710 (1374-1164) | |
| 627-788, gnl|fr1|chrUn (303272353-303272553) | |
| 627-788, gnl|hg17|chr5 (39342456-39342676) | |
| 627-788, gnl|Hg17|chr5 (39342634-39342476) | |
| 627-788, gnl|loxAfr1|scaffold_148254 (4373-4152) | |
| 627-788, gnl|mm7|chr15 (6318553-6318330) | |
| 627-788, gnl|Mm7|chr15 (6318372-6318533) | |
| 627-788, gnl|monDom2|scaffold_20 (32257386-32257170) | |
| 627-788, gnl|oryCun1|scaffold_201173 (177217-177438) | |
| 627-788, gnl|panTro1|chr4 (77381880-77381660) | |
| 627-788, gnl|rheMac2|chr6 (39132383-39132603) | |
| 627-788, gnl|rn3|chr2 (55713249-55713026) | |
| 1006-1245, gnl|bosTau2|chr5 (47434364-47434602) | |
| 1012-1163, gnl|bosTau2|chr16 (19039471-19039315) | |
| 1015-1122, gnl|bosTau2|chr10 (31075065-31074957) |
| Expressed library(ies): 18 entry(ies) | More info |
| Expressed library(ies): 18 entry(ies) | Help | Less info |
| lun (1.3544) | |
| lin (0.728014) | |
| sin (0.524843) | |
| cli (0.305623) | |
| liv (0.292569) | |
| fli (0.202881) | |
| sag (0.182715) | |
| ill (0.175593) | |
| duo (0.172801) | |
| fco (0.157208) | |
| eli (0.151814) | |
| ret (0.128733) | |
| sug (0.127291) | |
| tra (0.123092) | |
| clu (0.119646) | |
| cbl (0.114797) | |
| jca (0.11396) | |
| jej (0.0989218) |
| Expressed library(ies): 18 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| lun (1.3544) | |
| lin (0.728014) | |
| sin (0.524843) | |
| cli (0.305623) | |
| liv (0.292569) | |
| fli (0.202881) | |
| sag (0.182715) | |
| ill (0.175593) | |
| duo (0.172801) | |
| fco (0.157208) | |
| eli (0.151814) | |
| ret (0.128733) | |
| sug (0.127291) | |
| tra (0.123092) | |
| clu (0.119646) | |
| cbl (0.114797) | |
| jca (0.11396) | |
| jej (0.0989218) |