Non-Coding RNA Search

Ss1.1-rlin25_l14.5

Sequence:


               
               TTAAAGAGACTCTGTTATATTGTATGTGGTGTACATAGTGCAAAGTGATTATTTCTATTT
CAGGCCATATTAATATTCTCATATCCCTTCCTACCTGGTGCACAGTAGCTTTTTAATACC
AGTCACGTCTCATTTCAACTTTTTTCTTCCTGGGTCATTGACTGTTAATGTATAACAATC
AGTTTCTTTGAAACTGCTGCAGAGTTGAGCTGTCAGTGGACACCCTGCTGACTCTACCTC
TTCACCACCCTACCAACCCCAGCAGACTCAGAAATCCCAAGTCCTGTCGCCAGACCTGTT
ATCCGGGGGCACACTGCTCGCGGTAATCTATGGAAGTGTTAGACATGAGCACTCAGTTAT
AATCAGAGTGTGAAACATGACTCTAGTGTCACAAGAAAAAGTTTTTTTCTGCAAGCAGTC
TCCTCATCTACCAGCTCCCACTTAATCAAACAGTCTTCTTATATAAGAACGCAGCCAAAT
ATATGTTGAATTTAAAACCCATTTATAATTCTCCTCCAAATACATGTGCTTGCTAAGAAC
AGATTCCAGTGCTCCGAGCTTCGGATCTGGAGATGTGTAAGAGGGAATTCGATATTATTC
TAATTTCTCTCTTACAGAGTATGAATAAAAGGTGTATTCAAACTTTGAAGTTTGTCCATC
AAAAGAGTAAAACATTACAAAGGACTGTCGTTGTCATGGTTTGAGTTGTAATCAATACCT
AGAGTCTGACCATTGAGCAACAGGATTTTACACACTGATACGCAACGTATTGGCTAGAAT
AATCCAGGACGATTTTAGCATCTTTTCTACATTCTCACCCCAGAATGAAGACTCCCGAAG
CCCACGAAGAAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTAAAGAGACTCTGTTATATTGTATGTGGTGTACATAGTGCAAAGTGATTATTTCTATTT
CAGGCCATATTAATATTCTCATATCCCTTCCTACCTGGTGCACAGTAGCTTTTTAATACC
AGTCACGTCTCATTTCAACTTTTTTCTTCCTGGGTCATTGACTGTTAATGTATAACAATC
AGTTTCTTTGAAACTGCTGCAGAGTTGAGCTGTCAGTGGACACCCTGCTGACTCTACCTC
TTCACCACCCTACCAACCCCAGCAGACTCAGAAATCCCAAGTCCTGTCGCCAGACCTGTT
ATCCGGGGGCACACTGCTCGCGGTAATCTATGGAAGTGTTAGACATGAGCACTCAGTTAT
AATCAGAGTGTGAAACATGACTCTAGTGTCACAAGAAAAAGTTTTTTTCTGCAAGCAGTC
TCCTCATCTACCAGCTCCCACTTAATCAAACAGTCTTCTTATATAAGAACGCAGCCAAAT
ATATGTTGAATTTAAAACCCATTTATAATTCTCCTCCAAATACATGTGCTTGCTAAGAAC
AGATTCCAGTGCTCCGAGCTTCGGATCTGGAGATGTGTAAGAGGGAATTCGATATTATTC
TAATTTCTCTCTTACAGAGTATGAATAAAAGGTGTATTCAAACTTTGAAGTTTGTCCATC
AAAAGAGTAAAACATTACAAAGGACTGTCGTTGTCATGGTTTGAGTTGTAATCAATACCT
AGAGTCTGACCATTGAGCAACAGGATTTTACACACTGATACGCAACGTATTGGCTAGAAT
AATCCAGGACGATTTTAGCATCTTTTCTACATTCTCACCCCAGAATGAAGACTCCCGAAG
CCCACGAAGAAC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               506-650, + strand, RNAz p=0.998615

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               506-650, + strand, RNAz p=0.998615

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-852, gnl|bosTau2|chr9 (56947418-56946568)
               

               
               1-852, gnl|Hg17|chr6 (157622957-157623825)
               

               
               1-852, gnl|Mm7|chr17 (5290239-5290991)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-852, gnl|bosTau2|chr9 (56947418-56946568)
               

               
               1-852, gnl|Hg17|chr6 (157622957-157623825)
               

               
               1-852, gnl|Mm7|chr17 (5290239-5290991)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               mgm (0.180343)
               

               
               cki (0.165235)
               

               
               lin (0.145603)
               

               
               hyp (0.142837)
               

               
               kid (0.129735)
               

               
               sug (0.127291)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mgm (0.180343)
               

               
               cki (0.165235)
               

               
               lin (0.145603)
               

               
               hyp (0.142837)
               

               
               kid (0.129735)
               

               
               sug (0.127291)

	1-852, gnl\|bosTau2\|chr9 (56947418-56946568)
	1-852, gnl\|Hg17\|chr6 (157622957-157623825)
	1-852, gnl\|Mm7\|chr17 (5290239-5290991)

	mgm (0.180343)
	cki (0.165235)
	lin (0.145603)
	hyp (0.142837)
	kid (0.129735)
	sug (0.127291)