Ss1.1-rlin25_n11.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CAGAGAAAAATAGACTAAGGAAACTAGAGGATGAAAATAATAGGTACCAGGTTGAATTAG AAAACCTAAAAGATGAATATGTAAGAACACTTGAAGAGACAAGGAAAGAAAAGACACTGT TGAATAGCCAGTTAGAAATTGAGAAAATGAAAGTTGAACAAGAAAGGAAGAAAGCAATTT TCACCCAAGAAGCAGTAAAAGAAAAGGAACGGAAGCCATTTTCTGTTTCTAGTACTCCCA CAATGTCACGCTCAAGTTCAATAAGTGGAGTTGATATGGCAGGGCTACAGACGTCTTTTC TCTCTCAGGATGAGCCTCATGATCACTCATTTGGACCAATGTCTGTATCAGCAAATGGGA GCAATCTTTATGATGCTGTAAGGATGGGAGCAGGATCAAGCATTATTGAAAATCTACAGT CTCAGCTAAAGCTAAAGGAAGGAGAAATTACTCATTTACAGCTAGAAATTGGCAATCTAG AAAAAACACGCTCAATAATGGCTGAAGAGCTAGTTAAATTAACAAATCAAAATGATGAAC TTGAAGAGAAAGTGAAGGAGATACCCAAACTGCGAACTCAGCTGAGAGATTTGGATCAAA GATACAACACTATTCTGCAGATGTATGGAGAAAAAGCAGAAGAGGCAGAAGAACTTCGAT TAGATCTTGAAGATGTAAAAAATATGTATAAGACTCAAATAGATGAACTTTTAAGACAAA GGCTCAGTTAACTTCTGAAAATTACATTCCCATCAAACTGAATGTAAACATTTAATATTT AAGTCAGACTTC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CAGAGAAAAATAGACTAAGGAAACTAGAGGATGAAAATAATAGGTACCAGGTTGAATTAG AAAACCTAAAAGATGAATATGTAAGAACACTTGAAGAGACAAGGAAAGAAAAGACACTGT TGAATAGCCAGTTAGAAATTGAGAAAATGAAAGTTGAACAAGAAAGGAAGAAAGCAATTT TCACCCAAGAAGCAGTAAAAGAAAAGGAACGGAAGCCATTTTCTGTTTCTAGTACTCCCA CAATGTCACGCTCAAGTTCAATAAGTGGAGTTGATATGGCAGGGCTACAGACGTCTTTTC TCTCTCAGGATGAGCCTCATGATCACTCATTTGGACCAATGTCTGTATCAGCAAATGGGA GCAATCTTTATGATGCTGTAAGGATGGGAGCAGGATCAAGCATTATTGAAAATCTACAGT CTCAGCTAAAGCTAAAGGAAGGAGAAATTACTCATTTACAGCTAGAAATTGGCAATCTAG AAAAAACACGCTCAATAATGGCTGAAGAGCTAGTTAAATTAACAAATCAAAATGATGAAC TTGAAGAGAAAGTGAAGGAGATACCCAAACTGCGAACTCAGCTGAGAGATTTGGATCAAA GATACAACACTATTCTGCAGATGTATGGAGAAAAAGCAGAAGAGGCAGAAGAACTTCGAT TAGATCTTGAAGATGTAAAAAATATGTATAAGACTCAAATAGATGAACTTTTAAGACAAA GGCTCAGTTAACTTCTGAAAATTACATTCCCATCAAACTGAATGTAAACATTTAATATTT AAGTCAGACTTC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 588-706, + strand, RNAz p=0.651021 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 588-706, + strand, RNAz p=0.651021 |
| Aligned organism(s): 34 entry(ies) | More info |
| Aligned organism(s): 34 entry(ies) | Help | Less info |
| 307-464, gnl|bosTau2|chr22 (23020001-23020158) | |
| 307-464, gnl|canFam2|chr20 (25708230-25708356) | |
| 307-464, gnl|canFam2|chr20 (25708388-25708210) | |
| 307-464, gnl|danRer3|chr11 (17345986-17345858) | |
| 307-464, gnl|danRer3|chr11 (17345827-17345985) | |
| 307-464, gnl|dasNov1|scaffold_31168 (40763-40892) | |
| 307-464, gnl|dasNov1|scaffold_31168 (40924-40737) | |
| 307-464, gnl|fr1|chrUn (169507493-169507358) | |
| 307-464, gnl|fr1|chrUn (169507326-169507511) | |
| 307-464, gnl|galGal2|chrUn (128158610-128158777) | |
| 307-464, gnl|hg17|chr16 (13459684-13459813) | |
| 307-464, gnl|hg17|chr3 (69157397-69157587) | |
| 307-464, gnl|Hg17|chr3 (69157555-69157398) | |
| 307-464, gnl|loxAfr1|scaffold_50 (125613-125742) | |
| 307-464, gnl|loxAfr1|scaffold_50 (125774-125585) | |
| 307-464, gnl|mm7|chr6 (97246283-97246155) | |
| 307-464, gnl|mm7|chr6 (97246123-97246306) | |
| 307-464, gnl|Mm7|chr6 (97246281-97246124) | |
| 307-464, gnl|monDom2|scaffold_5 (16337618-16337491) | |
| 307-464, gnl|monDom2|scaffold_5 (16337459-16337649) | |
| 307-464, gnl|oryCun1|scaffold_157272 (3994-4122) | |
| 307-464, gnl|oryCun1|scaffold_157272 (4154-3965) | |
| 307-464, gnl|panTro1|chr18 (13865627-13865756) | |
| 307-464, gnl|panTro1|chr2 (70943565-70943755) | |
| 307-464, gnl|rheMac2|chr2 (67127101-67127229) | |
| 307-464, gnl|rheMac2|chr2 (67127261-67127071) | |
| 307-464, gnl|rn3|chr3 (112986820-112986692) | |
| 307-464, gnl|rn3|chr4 (132123143-132123327) | |
| 307-464, gnl|tetNig1|chr11 (1235386-1235521) | |
| 307-464, gnl|tetNig1|chr11 (1235553-1235359) | |
| 307-464, gnl|xenTro1|scaffold_740 (294091-294267) | |
| 588-788, gnl|bosTau2|chr22 (23022170-23022371) | |
| 588-788, gnl|Hg17|chr3 (69155161-69154953) | |
| 588-788, gnl|Mm7|chr6 (97243578-97243377) |
| Aligned organism(s): 34 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 307-464, gnl|bosTau2|chr22 (23020001-23020158) | |
| 307-464, gnl|canFam2|chr20 (25708230-25708356) | |
| 307-464, gnl|canFam2|chr20 (25708388-25708210) | |
| 307-464, gnl|danRer3|chr11 (17345986-17345858) | |
| 307-464, gnl|danRer3|chr11 (17345827-17345985) | |
| 307-464, gnl|dasNov1|scaffold_31168 (40763-40892) | |
| 307-464, gnl|dasNov1|scaffold_31168 (40924-40737) | |
| 307-464, gnl|fr1|chrUn (169507493-169507358) | |
| 307-464, gnl|fr1|chrUn (169507326-169507511) | |
| 307-464, gnl|galGal2|chrUn (128158610-128158777) | |
| 307-464, gnl|hg17|chr16 (13459684-13459813) | |
| 307-464, gnl|hg17|chr3 (69157397-69157587) | |
| 307-464, gnl|Hg17|chr3 (69157555-69157398) | |
| 307-464, gnl|loxAfr1|scaffold_50 (125613-125742) | |
| 307-464, gnl|loxAfr1|scaffold_50 (125774-125585) | |
| 307-464, gnl|mm7|chr6 (97246283-97246155) | |
| 307-464, gnl|mm7|chr6 (97246123-97246306) | |
| 307-464, gnl|Mm7|chr6 (97246281-97246124) | |
| 307-464, gnl|monDom2|scaffold_5 (16337618-16337491) | |
| 307-464, gnl|monDom2|scaffold_5 (16337459-16337649) | |
| 307-464, gnl|oryCun1|scaffold_157272 (3994-4122) | |
| 307-464, gnl|oryCun1|scaffold_157272 (4154-3965) | |
| 307-464, gnl|panTro1|chr18 (13865627-13865756) | |
| 307-464, gnl|panTro1|chr2 (70943565-70943755) | |
| 307-464, gnl|rheMac2|chr2 (67127101-67127229) | |
| 307-464, gnl|rheMac2|chr2 (67127261-67127071) | |
| 307-464, gnl|rn3|chr3 (112986820-112986692) | |
| 307-464, gnl|rn3|chr4 (132123143-132123327) | |
| 307-464, gnl|tetNig1|chr11 (1235386-1235521) | |
| 307-464, gnl|tetNig1|chr11 (1235553-1235359) | |
| 307-464, gnl|xenTro1|scaffold_740 (294091-294267) | |
| 588-788, gnl|bosTau2|chr22 (23022170-23022371) | |
| 588-788, gnl|Hg17|chr3 (69155161-69154953) | |
| 588-788, gnl|Mm7|chr6 (97243578-97243377) |
| Expressed library(ies): 4 entry(ies) | More info |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
| hea (0.204499) | |
| lin (0.145603) | |
| kid (0.129735) | |
| tra (0.123092) |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| hea (0.204499) | |
| lin (0.145603) | |
| kid (0.129735) | |
| tra (0.123092) |