Ss1.1-rlin25_n19.5
|
AGAATTTGTCTGTCCTCTGGGGTGGAATCTGTCGAGCCTTGAGAGAAGCCTGTCTTGCGC
TGGCGCTGCCAGAGGCAACCTGCGTACTCCAGGAGGTGATGGGGATCCCCTCGTTCCTAG
CCCTCCCCGCTGCCAGGAGTGACTGGGCTGATTGCATGCCCTGCCATCCTTTGGGCCACA
TGCTCCTGTGGACAGCTCTGCTATTCCTGGCTCCTGTTCCTGGGACACGTGCAGTTCTCC
CAAAGGCTGAGGTGAAGCTTCAGCCTGCATGGATCAATGTGCTCCAGGAGGATTCTGTGA
CACTGACGTGCCAGGGCGACCATGACCCTGGGAACACCACCACCCAGTGGTTCCATAATG
GGAACTTCACCTGGACCGAGAACCAGCCCAGCTTCAGCTTTAAGGCCAGGAGAGCTAGCA
GCGGATACTACAGGTGCCAGACTGCCTACTCCAGTCTCAGCGACCCTGTGCATCTGGATG
TGATTTCTGACTGGCTGCTGCTCCAAACCTCTAGTCTGGTTTTCCAGGAAGGGGAGCCCA
TCTTGCTGAGGTGCCATAGCTGGAGAAACAAGCCTCTGCATAAGGTTGCATTTTTCCAGA
ATGGAAAATCTAAGAAGTTTTCCTATGTGGATTCCAACTTCTCCATCCCACAAGCAAACC
AGAGTCATAGTGGCGAGTACCACTGCACAGGATTTATCGGGAAGATGTCGTACTCATCAC
AGTCTGTGAACATCACTGTCCAAGGGTCCAGCTTGAACAACTTGCTGGTGACGATAGTTG
TGGCTGTGGTTGCTTGGATTGTTGCAATGGCTATTGCTGCTGCCATAGCAGCCTGGTTCC
GCCTCAGGCGAAAGCGGATTTCAGCCAATCACACTGATGCTGAAGAGGCTGCCAAAATTG
AGGCTGAGGATACAATCACCTATTCACTTCTCTTGCATCCGGAAGCTGCAGAAGGAGAAG
CAGAGGCTTCAGATTACCAGAACCACATTTAAATTTCATTATCTTGCCTGGGACTTGGGG
AAGAGAATAAGGATTTGGTGTTTTCTGCCCTGAATTCCTCTTAGGGAGGAGAAGAGAATT
TCGCAGTTGCAAAGGAAAACGACCCCTCCAGAGTTATCTACATGAATCCTGAAGCTCCCT
TTTCTGAAAGCCACAGACAATACCGTCTCAGATAACTGACCTGCTGATTTCTTCTGTGCC
TCAGCACTTCTCACCATTAGGACTCTTCTGTTAGACTTCCACACAGCCAGTGAAAATTAC
TTTTAATAAGAGATTGTAGCAACACGGGAAATACTTATGTTACAGATGACATGAGAAAAA
TTATATAAATATACATGATTTCAGAAATGTTGAAACAGACTAACATATGCCAATATATTA
AAAGCAATTGTTTCAGGGTGATGGAATTATTGGCGCTTTTCATTTCCTTTATTTTTCTGT
GTAGATCATATATTACTTTCATAATAAAATACTACACAAACAACAAAAAAAAAAAAAAAA |
Blue-coloured subsequences are predicted RNA structures by RNAz
|
AGAATTTGTCTGTCCTCTGGGGTGGAATCTGTCGAGCCTTGAGAGAAGCCTGTCTTGCGC
TGGCGCTGCCAGAGGCAACCTGCGTACTCCAGGAGGTGATGGGGATCCCCTCGTTCCTAG
CCCTCCCCGCTGCCAGGAGTGACTGGGCTGATTGCATGCCCTGCCATCCTTTGGGCCACA
TGCTCCTGTGGACAGCTCTGCTATTCCTGGCTCCTGTTCCTGGGACACGTGCAGTTCTCC
CAAAGGCTGAGGTGAAGCTTCAGCCTGCATGGATCAATGTGCTCCAGGAGGATTCTGTGA
CACTGACGTGCCAGGGCGACCATGACCCTGGGAACACCACCACCCAGTGGTTCCATAATG
GGAACTTCACCTGGACCGAGAACCAGCCCAGCTTCAGCTTTAAGGCCAGGAGAGCTAGCA
GCGGATACTACAGGTGCCAGACTGCCTACTCCAGTCTCAGCGACCCTGTGCATCTGGATG
TGATTTCTGACTGGCTGCTGCTCCAAACCTCTAGTCTGGTTTTCCAGGAAGGGGAGCCCA
TCTTGCTGAGGTGCCATAGCTGGAGAAACAAGCCTCTGCATAAGGTTGCATTTTTCCAGA
ATGGAAAATCTAAGAAGTTTTCCTATGTGGATTCCAACTTCTCCATCCCACAAGCAAACC
AGAGTCATAGTGGCGAGTACCACTGCACAGGATTTATCGGGAAGATGTCGTACTCATCAC
AGTCTGTGAACATCACTGTCCAAGGGTCCAGCTTGAACAACTTGCTGGTGACGATAGTTG
TGGCTGTGGTTGCTTGGATTGTTGCAATGGCTATTGCTGCTGCCATAGCAGCCTGGTTCC
GCCTCAGGCGAAAGCGGATTTCAGCCAATCACACTGATGCTGAAGAGGCTGCCAAAATTG
AGGCTGAGGATACAATCACCTATTCACTTCTCTTGCATCCGGAAGCTGCAGAAGGAGAAG
CAGAGGCTTCAGATTACCAGAACCACATTTAAATTTCATTATCTTGCCTGGGACTTGGGG
AAGAGAATAAGGATTTGGTGTTTTCTGCCCTGAATTCCTCTTAGGGAGGAGAAGAGAATT
TCGCAGTTGCAAAGGAAAACGACCCCTCCAGAGTTATCTACATGAATCCTGAAGCTCCCT
TTTCTGAAAGCCACAGACAATACCGTCTCAGATAACTGACCTGCTGATTTCTTCTGTGCC
TCAGCACTTCTCACCATTAGGACTCTTCTGTTAGACTTCCACACAGCCAGTGAAAATTAC
TTTTAATAAGAGATTGTAGCAACACGGGAAATACTTATGTTACAGATGACATGAGAAAAA
TTATATAAATATACATGATTTCAGAAATGTTGAAACAGACTAACATATGCCAATATATTA
AAAGCAATTGTTTCAGGGTGATGGAATTATTGGCGCTTTTCATTTCCTTTATTTTTCTGT
GTAGATCATATATTACTTTCATAATAAAATACTACACAAACAACAAAAAAAAAAAAAAAA |
|
gi|62088750|dbj|BAD92822.1| |
Protein identifier
|
gi|62088750|dbj|BAD92822.1| |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
11-210, gnl|bosTau2|chr3 (19101365-19101165) |
|
11-210, gnl|Hg17|chr1 (158364621-158364814) |
|
11-210, gnl|Mm7|chr1 (170952548-170952377) |
| |
|
484-744, gnl|bosTau2|chr3 (19191245-19190985) |
|
484-744, gnl|Hg17|chr1 (158292659-158292919) |
|
484-744, gnl|Mm7|chr1 (171030675-171030415) |
| |
|
901-1485, gnl|bosTau2|chr3 (19085516-19084929) |
|
901-1485, gnl|canFam2|chr38 (23980937-23980576) |
|
901-1485, gnl|dasNov1|scaffold_6830 (76229-75835) |
|
901-1485, gnl|echTel1|scaffold_280651 (63053-63439) |
|
901-1485, gnl|hg17|chr1 (158301810-158302205) |
|
901-1485, gnl|Hg17|chr1 (158378931-158379514) |
|
901-1485, gnl|loxAfr1|scaffold_21397 (63442-63034) |
|
901-1485, gnl|mm7|chr1 (170937601-170937243) |
|
901-1485, gnl|Mm7|chr1 (170937578-170937028) |
|
901-1485, gnl|monDom2|scaffold_16 (11220778-11221182) |
|
901-1485, gnl|oryCun1|scaffold_200887 (94503-94879) |
|
901-1485, gnl|panTro1|chr1 (140428157-140428553) |
|
901-1485, gnl|rheMac2|chr1 (140089536-140089931) |
|
901-1485, gnl|rn3|chr13 (86823757-86823399) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
11-210, gnl|bosTau2|chr3 (19101365-19101165) |
|
11-210, gnl|Hg17|chr1 (158364621-158364814) |
|
11-210, gnl|Mm7|chr1 (170952548-170952377) |
| |
|
484-744, gnl|bosTau2|chr3 (19191245-19190985) |
|
484-744, gnl|Hg17|chr1 (158292659-158292919) |
|
484-744, gnl|Mm7|chr1 (171030675-171030415) |
| |
|
901-1485, gnl|bosTau2|chr3 (19085516-19084929) |
|
901-1485, gnl|canFam2|chr38 (23980937-23980576) |
|
901-1485, gnl|dasNov1|scaffold_6830 (76229-75835) |
|
901-1485, gnl|echTel1|scaffold_280651 (63053-63439) |
|
901-1485, gnl|hg17|chr1 (158301810-158302205) |
|
901-1485, gnl|Hg17|chr1 (158378931-158379514) |
|
901-1485, gnl|loxAfr1|scaffold_21397 (63442-63034) |
|
901-1485, gnl|mm7|chr1 (170937601-170937243) |
|
901-1485, gnl|Mm7|chr1 (170937578-170937028) |
|
901-1485, gnl|monDom2|scaffold_16 (11220778-11221182) |
|
901-1485, gnl|oryCun1|scaffold_200887 (94503-94879) |
|
901-1485, gnl|panTro1|chr1 (140428157-140428553) |
|
901-1485, gnl|rheMac2|chr1 (140089536-140089931) |
|
901-1485, gnl|rn3|chr13 (86823757-86823399) |
|
mgp (8.53518) |
|
mcp (3.24232) |
|
gul (0.355177) |
|
fat (0.294855) |
|
spc (0.226732) |
|
mga (0.160205) |
|
lun (0.150489) |
|
bfe (0.149858) |
|
ski (0.146735) |
|
lin (0.145603) |
|
spl (0.143184) |
|
csk (0.140746) |
|
cov (0.132153) |
|
jca (0.11396) |
|
mgp (8.53518) |
|
mcp (3.24232) |
|
gul (0.355177) |
|
fat (0.294855) |
|
spc (0.226732) |
|
mga (0.160205) |
|
lun (0.150489) |
|
bfe (0.149858) |
|
ski (0.146735) |
|
lin (0.145603) |
|
spl (0.143184) |
|
csk (0.140746) |
|
cov (0.132153) |
|
jca (0.11396) |
