Non-Coding RNA Search

Ss1.1-rlin28_a3.5

Sequence:


               
               GCCTCTTGAAGTAGATTTAACGAAAGCAAAGAGACAAGATTTTGAACCATCTGTGGAACA
AGCCAGATATAGCAGCTGCCGACAGAATACAGCTCTGGTGCCCCCCAAGCCACAGGAGGT
GACCTCCCCTTGCAGACCCAGCTACTCCAATGGCCCCCATGTTGTGACACAGGGGGATAA
GGACAGCAGCTCCCGAAGCCTGGCCTCCTGCACTATGGATAGTGATGCCACATACCTGCG
GAAGCTCCGGCAGAAACAGCTGCAGCAGCAGTTCCGGGAGAAAATGGAGAGGCAGCAGCA
GGGTCCCCCCTCTACTCTACCCACTGAAAAGAAGGATCAAGCAGGACCACTGGCGAAGCA
CAGCACTCCCGGAATTGCTGTTTCAGAGCCACTCACTAAGACAGCCGTCCTTGCAGACAG
TCTTGAAATGTGGGACATGGTTCTTGATGTAGCAGACAGCGTGGTCCAGCCCTTGGCTAA
ACCAGAACCACTGCAGACCCCTGCCACCTCAGTCCCGAAGAACCAGATGGAGACTCAGAA
CAGGACCCACCAGAATCCACAAGCAAAACCTGAACCCTGGCACTTCCAGACTCACCATCT
TAACCAGCACATAGCAGGAGACTGTGATTCCTCTAGGAAGAACCAGGACATGAAGAAAAG
GAAATTAGATCCATCTTAACCGAGGCAGGTGACCTCACTGGACTCTGTCACAAAGGGACT
TTCAGAAATTATGCTTTGATCATGAAATGATTTATCATTTGTACATAAGTCAAATCAGAG
CTAATGAAATCATGAATGTGCTTTACCTCCAGGGATTTACCTTGCTTCTTCCAGAACTTT
ACCAGATTTGACTGTTGGAAGCTGCTACAGATAAAGCTGGGCAACTGGAAAACAGGCAGT
TAAAGAGAGCTTGTCACACAGTCCAGGTTGGGAAGCTCTGCGGAGATTAAACACTCAAGG
TTCTTCACTGTTTATTCCTAAGCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCTCTTGAAGTAGATTTAACGAAAGCAAAGAGACAAGATTTTGAACCATCTGTGGAACA
AGCCAGATATAGCAGCTGCCGACAGAATACAGCTCTGGTGCCCCCCAAGCCACAGGAGGT
GACCTCCCCTTGCAGACCCAGCTACTCCAATGGCCCCCATGTTGTGACACAGGGGGATAA
GGACAGCAGCTCCCGAAGCCTGGCCTCCTGCACTATGGATAGTGATGCCACATACCTGCG
GAAGCTCCGGCAGAAACAGCTGCAGCAGCAGTTCCGGGAGAAAATGGAGAGGCAGCAGCA
GGGTCCCCCCTCTACTCTACCCACTGAAAAGAAGGATCAAGCAGGACCACTGGCGAAGCA
CAGCACTCCCGGAATTGCTGTTTCAGAGCCACTCACTAAGACAGCCGTCCTTGCAGACAG
TCTTGAAATGTGGGACATGGTTCTTGATGTAGCAGACAGCGTGGTCCAGCCCTTGGCTAA
ACCAGAACCACTGCAGACCCCTGCCACCTCAGTCCCGAAGAACCAGATGGAGACTCAGAA
CAGGACCCACCAGAATCCACAAGCAAAACCTGAACCCTGGCACTTCCAGACTCACCATCT
TAACCAGCACATAGCAGGAGACTGTGATTCCTCTAGGAAGAACCAGGACATGAAGAAAAG
GAAATTAGATCCATCTTAACCGAGGCAGGTGACCTCACTGGACTCTGTCACAAAGGGACT
TTCAGAAATTATGCTTTGATCATGAAATGATTTATCATTTGTACATAAGTCAAATCAGAG
CTAATGAAATCATGAATGTGCTTTACCTCCAGGGATTTACCTTGCTTCTTCCAGAACTTT
ACCAGATTTGACTGTTGGAAGCTGCTACAGATAAAGCTGGGCAACTGGAAAACAGGCAGT
TAAAGAGAGCTTGTCACACAGTCCAGGTTGGGAAGCTCTGCGGAGATTAAACACTCAAGG
TTCTTCACTGTTTATTCCTAAGCT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61555154|gb|AAX46669.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61555154|gb|AAX46669.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               521-618, - strand, RNAz p=0.885858

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               521-618, - strand, RNAz p=0.885858

Aligned organism(s): 18 entry(ies)

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Aligned organism(s): 18 entry(ies)

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               1-214, gnl|bosTau2|chr5 (65128134-65127923)
               

               
               1-214, gnl|Hg17|chr12 (896245-896048)
               

               
               1-214, gnl|Mm7|chr6 (119943890-119944114)
               


               
               409-618, gnl|bosTau2|chr5 (65126541-65126317)
               

               
               409-618, gnl|canFam2|chr27 (45950068-45950211)
               

               
               409-618, gnl|dasNov1|scaffold_8984 (30432-30262)
               

               
               409-618, gnl|echTel1|scaffold_293428 (34365-34197)
               

               
               409-618, gnl|galGal2|chr1 (57195573-57195752)
               

               
               409-618, gnl|hg17|chr12 (893319-893489)
               

               
               409-618, gnl|Hg17|chr12 (893544-893320)
               

               
               409-618, gnl|loxAfr1|scaffold_44822 (10038-9907)
               

               
               409-618, gnl|mm7|chr6 (119946324-119946168)
               

               
               409-618, gnl|Mm7|chr6 (119946112-119946321)
               

               
               409-618, gnl|monDom2|scaffold_31 (24869367-24869495)
               

               
               409-618, gnl|oryCun1|scaffold_181622 (4393-4220)
               

               
               409-618, gnl|panTro1|chr10 (958931-959101)
               

               
               409-618, gnl|rheMac2|chr11 (903717-903887)
               

               
               409-618, gnl|rn3|chr4 (156538393-156538225)

Aligned organism(s): 18 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-214, gnl|bosTau2|chr5 (65128134-65127923)
               

               
               1-214, gnl|Hg17|chr12 (896245-896048)
               

               
               1-214, gnl|Mm7|chr6 (119943890-119944114)
               


               
               409-618, gnl|bosTau2|chr5 (65126541-65126317)
               

               
               409-618, gnl|canFam2|chr27 (45950068-45950211)
               

               
               409-618, gnl|dasNov1|scaffold_8984 (30432-30262)
               

               
               409-618, gnl|echTel1|scaffold_293428 (34365-34197)
               

               
               409-618, gnl|galGal2|chr1 (57195573-57195752)
               

               
               409-618, gnl|hg17|chr12 (893319-893489)
               

               
               409-618, gnl|Hg17|chr12 (893544-893320)
               

               
               409-618, gnl|loxAfr1|scaffold_44822 (10038-9907)
               

               
               409-618, gnl|mm7|chr6 (119946324-119946168)
               

               
               409-618, gnl|Mm7|chr6 (119946112-119946321)
               

               
               409-618, gnl|monDom2|scaffold_31 (24869367-24869495)
               

               
               409-618, gnl|oryCun1|scaffold_181622 (4393-4220)
               

               
               409-618, gnl|panTro1|chr10 (958931-959101)
               

               
               409-618, gnl|rheMac2|chr11 (903717-903887)
               

               
               409-618, gnl|rn3|chr4 (156538393-156538225)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               fty (0.17584)
               

               
               lin (0.145603)
               

               
               clu (0.119646)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fty (0.17584)
               

               
               lin (0.145603)
               

               
               clu (0.119646)

	1-214, gnl\|bosTau2\|chr5 (65128134-65127923)
	1-214, gnl\|Hg17\|chr12 (896245-896048)
	1-214, gnl\|Mm7\|chr6 (119943890-119944114)

	409-618, gnl\|bosTau2\|chr5 (65126541-65126317)
	409-618, gnl\|canFam2\|chr27 (45950068-45950211)
	409-618, gnl\|dasNov1\|scaffold_8984 (30432-30262)
	409-618, gnl\|echTel1\|scaffold_293428 (34365-34197)
	409-618, gnl\|galGal2\|chr1 (57195573-57195752)
	409-618, gnl\|hg17\|chr12 (893319-893489)
	409-618, gnl\|Hg17\|chr12 (893544-893320)
	409-618, gnl\|loxAfr1\|scaffold_44822 (10038-9907)
	409-618, gnl\|mm7\|chr6 (119946324-119946168)
	409-618, gnl\|Mm7\|chr6 (119946112-119946321)
	409-618, gnl\|monDom2\|scaffold_31 (24869367-24869495)
	409-618, gnl\|oryCun1\|scaffold_181622 (4393-4220)
	409-618, gnl\|panTro1\|chr10 (958931-959101)
	409-618, gnl\|rheMac2\|chr11 (903717-903887)
	409-618, gnl\|rn3\|chr4 (156538393-156538225)