Non-Coding RNA Search

Ss1.1-rlin28_g7.5

Sequence:


               
               TCCCGGGCCCGGCACTGTACCCGTGTCTCCAAGAATAGAGGCTGTTAGCGTCGCACCAGA
AAATGCAGGCGCTCAGCAAGGAAGGGCCACCAAGTATGACACTCCAGTCCCGGGCCAGAA
CCAAACAAATGGACAATCAGTGGCTGTGATGGGGGCACAGCAGCCTGTTCCTGTGACACC
CAAAGGGTCTCAATTAGTGGCCGAAAGTTTCTTCCGTACCCCAGGCGGACCAACGAAGCC
TACCGGCTCAGCCTATGTGGATTTTGATGGTGCTGATAAAACCTCCATAGCATCTCTCTT
TGTCCCACAGCGAAAACTGGAAGTCTCAACGGAGGATGTCCCCTAAAGGACAGATGTGGC
TTCATTTAATTTTCTAAAGAGTTCTTTAAGAGAGAAGATGTTACTCAGACTGATTGAGAG
AACACATTCTCTGAAAATACTGTAAATATGTTGGGAGTTTACGTAATTTCAAAACAGACA
CTTGTTTTCATACTTATACATACACTCACATATATAAATATATATTTGTATTAAGCTACG
TTCAGCTATTAGTCTTACAAAATAAAAGTAAAATGTTGAACTAAGGTATAATAACTTCCA
GGGAGGAAGATTCATTTCTTTCAGCTGTGCCTCTACTATTATGCAGAATAACTGTGTTAA
AGTTTACTTCCCTTTTGTGAATCTGTGACAGGCCTAACACAGCATTTTCTTCAACTGTGC
ACAAAGAAAACGCTGTGATGTATAAAATTGTATTTTTAAATAGAAGGGCTGTAGCTATAT
TTTTTTGTAATTGCTTTAATCCGTTGTGGTTGCAGTATGTCTTTGTAAAGTTCGCAACAA
TCCTCAATCACGTCCATGGAAAAATTATTTATAAAATGTATTTTTAATCATAAGTTGTTC
AAATTAAAATTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCCCGGGCCCGGCACTGTACCCGTGTCTCCAAGAATAGAGGCTGTTAGCGTCGCACCAGA
AAATGCAGGCGCTCAGCAAGGAAGGGCCACCAAGTATGACACTCCAGTCCCGGGCCAGAA
CCAAACAAATGGACAATCAGTGGCTGTGATGGGGGCACAGCAGCCTGTTCCTGTGACACC
CAAAGGGTCTCAATTAGTGGCCGAAAGTTTCTTCCGTACCCCAGGCGGACCAACGAAGCC
TACCGGCTCAGCCTATGTGGATTTTGATGGTGCTGATAAAACCTCCATAGCATCTCTCTT
TGTCCCACAGCGAAAACTGGAAGTCTCAACGGAGGATGTCCCCTAAAGGACAGATGTGGC
TTCATTTAATTTTCTAAAGAGTTCTTTAAGAGAGAAGATGTTACTCAGACTGATTGAGAG
AACACATTCTCTGAAAATACTGTAAATATGTTGGGAGTTTACGTAATTTCAAAACAGACA
CTTGTTTTCATACTTATACATACACTCACATATATAAATATATATTTGTATTAAGCTACG
TTCAGCTATTAGTCTTACAAAATAAAAGTAAAATGTTGAACTAAGGTATAATAACTTCCA
GGGAGGAAGATTCATTTCTTTCAGCTGTGCCTCTACTATTATGCAGAATAACTGTGTTAA
AGTTTACTTCCCTTTTGTGAATCTGTGACAGGCCTAACACAGCATTTTCTTCAACTGTGC
ACAAAGAAAACGCTGTGATGTATAAAATTGTATTTTTAAATAGAAGGGCTGTAGCTATAT
TTTTTTGTAATTGCTTTAATCCGTTGTGGTTGCAGTATGTCTTTGTAAAGTTCGCAACAA
TCCTCAATCACGTCCATGGAAAAATTATTTATAAAATGTATTTTTAATCATAAGTTGTTC
AAATTAAAATTT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               634-786, - strand, RNAz p=0.99966

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               634-786, - strand, RNAz p=0.99966

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               159-912, gnl|bosTau2|chr29 (19383750-19384500)
               

               
               159-912, gnl|Hg17|chr11 (19202968-19202198)
               

               
               159-912, gnl|Mm7|chr7 (45087899-45087106)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               159-912, gnl|bosTau2|chr29 (19383750-19384500)
               

               
               159-912, gnl|Hg17|chr11 (19202968-19202198)
               

               
               159-912, gnl|Mm7|chr7 (45087899-45087106)

Expressed library(ies): 7 entry(ies)

More info

Expressed library(ies): 7 entry(ies)

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               elu (0.385356)
               

               
               cje (0.165235)
               

               
               lin (0.145603)
               

               
               csk (0.140746)
               

               
               nca (0.136874)
               

               
               thg (0.126791)
               

               
               ese (0.126502)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               elu (0.385356)
               

               
               cje (0.165235)
               

               
               lin (0.145603)
               

               
               csk (0.140746)
               

               
               nca (0.136874)
               

               
               thg (0.126791)
               

               
               ese (0.126502)

	159-912, gnl\|bosTau2\|chr29 (19383750-19384500)
	159-912, gnl\|Hg17\|chr11 (19202968-19202198)
	159-912, gnl\|Mm7\|chr7 (45087899-45087106)

	elu (0.385356)
	cje (0.165235)
	lin (0.145603)
	csk (0.140746)
	nca (0.136874)
	thg (0.126791)
	ese (0.126502)