Non-Coding RNA Search

Ss1.1-rlin28_o5.5

Sequence:


               
               GTTTATTTTTCTAGTTCTCAAATTAGCCCCTCATTAGTAGCATCAGCATAATCTAAGAAC
TTGTTAAAAATTATGAATTCCCAGACTCTCTGAGTCAGAAACTCTGCAGAGTCCCATTAG
TCTGTTTTAAATAACCCTTCAGGTGGTTATGATGCCCACTAAAATTTGAGAACTATTATT
TTAGGTACTCTTTTCTTAATCAAAACCATACTCAGGTTTTAAAATTATATGTAAAGTCCT
TAATTCAGTCCGAGTTTGTCCTCAGGTGGAAAAATGTTATTCCAAGAACTTCAGATTTAG
GTTTCTTTAGGAAAGCAGCTTCTGAAGGAAAGGGGGGGGGGGGACTATTGAAAGTAATTG
TGAAGTCTGTCAGTCTGAGAAGTCTACTCAGAGGAAAGCCATCTATCTCAAACTTCTCCC
AAATTTATTTGAGCCCCAAGCTGACAGCCCTTCTCCCTTTTTTTTGCCCAAATATTAATC
CTTTTAAAGTGCTAAATGGTAATACTTGGAAAATGCTGGATTAGCGATTTCTAGGTAAAA
TGATTTCTGGTATGTTAAGTTTCCAGGCAACTAGGTGCTTGGGATTCTTTTGTGTATGAA
CTCACACTTCCTGCACTTGAATGGTTATTTATACATACTAGAAGATTTCAGTGTTGACCT
TAATGTATGTTTGTGTATCAACTACTTTAGATTATAATGGCAAAACTGGCAGGTGGACCT
AAAGCTCCTAAACCACAAGGAAATTGGGATAAAGATGGTTGGCAAGACGAATCTCATATA
TAAATAGCAAATCAGGTGCCAGACTGATTTATACCAGTGATGCATGCAGATGTTTTTCAT
ATTTGACGCATTGGGATGTTGAAGTGCATGTCTTAGAATGCCCTTGTTTCTGTGTGAAAT
TATTGCTGTTAGTGTCCACAAAAGCAGAAAACTCATACTGCTGGAAACTAATTAACATTA
TGCTGCAATACTTCATATGCAGTGTATTCTAGATTGCTCATTGGCGATGATTGCTTAATG
TTGAATCAGGCTAACAGAAGAGTATTCTTTCTCTTCATTCTGAAGCTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTTATTTTTCTAGTTCTCAAATTAGCCCCTCATTAGTAGCATCAGCATAATCTAAGAAC
TTGTTAAAAATTATGAATTCCCAGACTCTCTGAGTCAGAAACTCTGCAGAGTCCCATTAG
TCTGTTTTAAATAACCCTTCAGGTGGTTATGATGCCCACTAAAATTTGAGAACTATTATT
TTAGGTACTCTTTTCTTAATCAAAACCATACTCAGGTTTTAAAATTATATGTAAAGTCCT
TAATTCAGTCCGAGTTTGTCCTCAGGTGGAAAAATGTTATTCCAAGAACTTCAGATTTAG
GTTTCTTTAGGAAAGCAGCTTCTGAAGGAAAGGGGGGGGGGGGACTATTGAAAGTAATTG
TGAAGTCTGTCAGTCTGAGAAGTCTACTCAGAGGAAAGCCATCTATCTCAAACTTCTCCC
AAATTTATTTGAGCCCCAAGCTGACAGCCCTTCTCCCTTTTTTTTGCCCAAATATTAATC
CTTTTAAAGTGCTAAATGGTAATACTTGGAAAATGCTGGATTAGCGATTTCTAGGTAAAA
TGATTTCTGGTATGTTAAGTTTCCAGGCAACTAGGTGCTTGGGATTCTTTTGTGTATGAA
CTCACACTTCCTGCACTTGAATGGTTATTTATACATACTAGAAGATTTCAGTGTTGACCT
TAATGTATGTTTGTGTATCAACTACTTTAGATTATAATGGCAAAACTGGCAGGTGGACCT
AAAGCTCCTAAACCACAAGGAAATTGGGATAAAGATGGTTGGCAAGACGAATCTCATATA
TAAATAGCAAATCAGGTGCCAGACTGATTTATACCAGTGATGCATGCAGATGTTTTTCAT
ATTTGACGCATTGGGATGTTGAAGTGCATGTCTTAGAATGCCCTTGTTTCTGTGTGAAAT
TATTGCTGTTAGTGTCCACAAAAGCAGAAAACTCATACTGCTGGAAACTAATTAACATTA
TGCTGCAATACTTCATATGCAGTGTATTCTAGATTGCTCATTGGCGATGATTGCTTAATG
TTGAATCAGGCTAACAGAAGAGTATTCTTTCTCTTCATTCTGAAGCTT

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

Help | Less info


               
               1-128, gnl|bosTau2|chr1 (6497413-6497541)
               


               
               373-1068, gnl|bosTau2|chr1 (6498084-6498768)

Aligned organism(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-128, gnl|bosTau2|chr1 (6497413-6497541)
               


               
               373-1068, gnl|bosTau2|chr1 (6498084-6498768)

Expressed library(ies): 6 entry(ies)

More info

Expressed library(ies): 6 entry(ies)

Help | Less info


               
               fbs (0.350693)
               

               
               sme (0.305437)
               

               
               liv (0.146284)
               

               
               lin (0.145603)
               

               
               spl (0.143184)
               

               
               ret (0.128733)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fbs (0.350693)
               

               
               sme (0.305437)
               

               
               liv (0.146284)
               

               
               lin (0.145603)
               

               
               spl (0.143184)
               

               
               ret (0.128733)

	1-128, gnl\|bosTau2\|chr1 (6497413-6497541)

	373-1068, gnl\|bosTau2\|chr1 (6498084-6498768)

	fbs (0.350693)
	sme (0.305437)
	liv (0.146284)
	lin (0.145603)
	spl (0.143184)
	ret (0.128733)