Ss1.1-rlin29_i4.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TACAGAGGTACCTATGCAATTGGGTATTTGAAAGCAGAACTTCTCACTCTATCCCCAGTC CCTGGTTTCCTATTAAATAGTCATCTTTTCTTAACATCTTTACCCTAAACAGACTCACTA CCCTTCATGCTTCTTATCTGAATCTTGGAGTTGTCTTTTAGTCTTTTTCTGGTCTCTACT GTTCATGTCCAAAATCTTACCAAGTTTCTCTAATTCTTAGTTGGTTTTCTCCTTGAGGCT GGATTCTTTACATTTCTGCCATACCTTCATATCCCTTCTCTGTAGATCCGTGTCATCCAA GACCCAGGTTATGGTAATTCTTTCTTTTCAGTTTCCTTGCTCCCAAGATCCCCACCTTGT ATGCTTCCAAGGTGATCCTCCTTGAAGTCGATTTTCACTCAAGAACACCCAAAAAGTAAT TCCTGACAGAGCAATGATGTTCCAAGTTCTCCATACCTTACCCTCCATGCTTAATCTGCC TCAGCTGCATCACTTTCTAGCATATTCCACTTGATTCATCAGTCACTCTTCCTGTGACCG TCCACTGTTGTCTTATAAGCCGTTGCCTCTGTGCCTTTCTCATGCTATTCTCTTTGCTTA GATTTCTCTTTGGCCCCAGCCCATGTTCATTACTCCCTTCAAAGCCTAGCTTCCATTATA TCTTCTAAGTGAGCTCTCCCTGACGATTTCACCTCACACTAAGACCTCCCTTATTCTGTG CTGCCTCAGCACTGATCCTTTGAGTTTGTTCTGTGGTCCATGCACTTACTAATGTATTGT TTTGTAATTATTTTCTAGTATTCTGTATTGTAGTTTCACATTTGTATTTATTTCCGAAGT TAAATTGTAAGCTCCTTGAGGGCAGGAATAGTGACTTCTACATTTGTATCTCTGCACCCC TTAGTGCCTAGTACAGTGCTGAGCACACAGTAGGTGTTTAATAAATGCTTGTCAAATTAT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TACAGAGGTACCTATGCAATTGGGTATTTGAAAGCAGAACTTCTCACTCTATCCCCAGTC CCTGGTTTCCTATTAAATAGTCATCTTTTCTTAACATCTTTACCCTAAACAGACTCACTA CCCTTCATGCTTCTTATCTGAATCTTGGAGTTGTCTTTTAGTCTTTTTCTGGTCTCTACT GTTCATGTCCAAAATCTTACCAAGTTTCTCTAATTCTTAGTTGGTTTTCTCCTTGAGGCT GGATTCTTTACATTTCTGCCATACCTTCATATCCCTTCTCTGTAGATCCGTGTCATCCAA GACCCAGGTTATGGTAATTCTTTCTTTTCAGTTTCCTTGCTCCCAAGATCCCCACCTTGT ATGCTTCCAAGGTGATCCTCCTTGAAGTCGATTTTCACTCAAGAACACCCAAAAAGTAAT TCCTGACAGAGCAATGATGTTCCAAGTTCTCCATACCTTACCCTCCATGCTTAATCTGCC TCAGCTGCATCACTTTCTAGCATATTCCACTTGATTCATCAGTCACTCTTCCTGTGACCG TCCACTGTTGTCTTATAAGCCGTTGCCTCTGTGCCTTTCTCATGCTATTCTCTTTGCTTA GATTTCTCTTTGGCCCCAGCCCATGTTCATTACTCCCTTCAAAGCCTAGCTTCCATTATA TCTTCTAAGTGAGCTCTCCCTGACGATTTCACCTCACACTAAGACCTCCCTTATTCTGTG CTGCCTCAGCACTGATCCTTTGAGTTTGTTCTGTGGTCCATGCACTTACTAATGTATTGT TTTGTAATTATTTTCTAGTATTCTGTATTGTAGTTTCACATTTGTATTTATTTCCGAAGT TAAATTGTAAGCTCCTTGAGGGCAGGAATAGTGACTTCTACATTTGTATCTCTGCACCCC TTAGTGCCTAGTACAGTGCTGAGCACACAGTAGGTGTTTAATAAATGCTTGTCAAATTAT |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 281-395, - strand, RNAz p=0.919564 | |
| 290-395, - strand, RNAz p=0.99802 | |
| 839-960, - strand, RNAz p=0.836812 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 281-395, - strand, RNAz p=0.919564 | |
| 290-395, - strand, RNAz p=0.99802 | |
| 839-960, - strand, RNAz p=0.836812 |
| Aligned organism(s): 29 entry(ies) | More info |
| Aligned organism(s): 29 entry(ies) | Help | Less info |
| 7-395, gnl|bosTau2|chr23 (24556077-24555685) | |
| 7-395, gnl|canFam2|chr35 (28339817-28340216) | |
| 7-395, gnl|dasNov1|scaffold_4338 (72835-73177) | |
| 7-395, gnl|echTel1|scaffold_229662 (15210-15540) | |
| 7-395, gnl|fr1|chrUn (240183396-240183676) | |
| 7-395, gnl|hg17|chr6 (28234138-28234468) | |
| 7-395, gnl|Hg17|chr6 (28234169-28234539) | |
| 7-395, gnl|loxAfr1|scaffold_5644 (8561-8895) | |
| 7-395, gnl|mm7|chr13 (20880180-20879828) | |
| 7-395, gnl|Mm7|chr13 (20880148-20879762) | |
| 7-395, gnl|monDom2|scaffold_88 (3488821-3489175) | |
| 7-395, gnl|oryCun1|scaffold_176072 (7010-6693) | |
| 7-395, gnl|panTro1|chr5 (28689467-28689797) | |
| 7-395, gnl|rheMac2|chr4 (27860014-27860345) | |
| 7-395, gnl|rn3|chr17 (50702014-50702359) | |
| 7-395, gnl|xenTro1|scaffold_1196 (118388-118703) | |
| 416-960, gnl|bosTau2|chr23 (24555638-24555091) | |
| 416-960, gnl|canFam2|chr35 (28340486-28341122) | |
| 416-960, gnl|dasNov1|scaffold_4338 (73246-73884) | |
| 416-960, gnl|echTel1|scaffold_229662 (15581-16239) | |
| 416-960, gnl|hg17|chr6 (28234649-28235319) | |
| 416-960, gnl|Hg17|chr6 (28234676-28235218) | |
| 416-960, gnl|loxAfr1|scaffold_5644 (8947-9613) | |
| 416-960, gnl|mm7|chr13 (20879701-20879122) | |
| 416-960, gnl|Mm7|chr13 (20879728-20879210) | |
| 416-960, gnl|monDom2|scaffold_88 (3489365-3489994) | |
| 416-960, gnl|panTro1|chr5 (28690008-28690679) | |
| 416-960, gnl|rheMac2|chr4 (27860531-27861191) | |
| 416-960, gnl|rn3|chr17 (50702485-50703114) |
| Aligned organism(s): 29 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 7-395, gnl|bosTau2|chr23 (24556077-24555685) | |
| 7-395, gnl|canFam2|chr35 (28339817-28340216) | |
| 7-395, gnl|dasNov1|scaffold_4338 (72835-73177) | |
| 7-395, gnl|echTel1|scaffold_229662 (15210-15540) | |
| 7-395, gnl|fr1|chrUn (240183396-240183676) | |
| 7-395, gnl|hg17|chr6 (28234138-28234468) | |
| 7-395, gnl|Hg17|chr6 (28234169-28234539) | |
| 7-395, gnl|loxAfr1|scaffold_5644 (8561-8895) | |
| 7-395, gnl|mm7|chr13 (20880180-20879828) | |
| 7-395, gnl|Mm7|chr13 (20880148-20879762) | |
| 7-395, gnl|monDom2|scaffold_88 (3488821-3489175) | |
| 7-395, gnl|oryCun1|scaffold_176072 (7010-6693) | |
| 7-395, gnl|panTro1|chr5 (28689467-28689797) | |
| 7-395, gnl|rheMac2|chr4 (27860014-27860345) | |
| 7-395, gnl|rn3|chr17 (50702014-50702359) | |
| 7-395, gnl|xenTro1|scaffold_1196 (118388-118703) | |
| 416-960, gnl|bosTau2|chr23 (24555638-24555091) | |
| 416-960, gnl|canFam2|chr35 (28340486-28341122) | |
| 416-960, gnl|dasNov1|scaffold_4338 (73246-73884) | |
| 416-960, gnl|echTel1|scaffold_229662 (15581-16239) | |
| 416-960, gnl|hg17|chr6 (28234649-28235319) | |
| 416-960, gnl|Hg17|chr6 (28234676-28235218) | |
| 416-960, gnl|loxAfr1|scaffold_5644 (8947-9613) | |
| 416-960, gnl|mm7|chr13 (20879701-20879122) | |
| 416-960, gnl|Mm7|chr13 (20879728-20879210) | |
| 416-960, gnl|monDom2|scaffold_88 (3489365-3489994) | |
| 416-960, gnl|panTro1|chr5 (28690008-28690679) | |
| 416-960, gnl|rheMac2|chr4 (27860531-27861191) | |
| 416-960, gnl|rn3|chr17 (50702485-50703114) |
| Expressed library(ies): 7 entry(ies) | More info |
| Expressed library(ies): 7 entry(ies) | Help | Less info |
| nco (0.161734) | |
| csp (0.161186) | |
| isp (0.150376) | |
| lin (0.145603) | |
| lyg (0.133103) | |
| pgl (0.118483) | |
| ldo (0.0970026) |
| Expressed library(ies): 7 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nco (0.161734) | |
| csp (0.161186) | |
| isp (0.150376) | |
| lin (0.145603) | |
| lyg (0.133103) | |
| pgl (0.118483) | |
| ldo (0.0970026) |