Non-Coding RNA Search

Ss1.1-rlin30_b3.5

Sequence:


               
               TTTTTCCCCCTCCATGTTCTAATGTTTGTGCATGTATATTACTGATTTTCGGAACTAACC
TTTGTTCGTGTATAGAGTTACGCCACTGTTGTTTTGCACCTTTGGGGAAGATAGAGAAGC
ATTAGAAATATCTGTCCACCTTTCCAGGTTCCTGACTGTCTTTGCAACAGCACACACAGG
TGGGAAAACACCTGGAGTACATTCATTCAGCATCCTCTGCGAAGCAACCTAGAACCTGTG
CTTTTGCAAAAGAAGTCGATCTGAAAGTCCGAGCTAGCGTTGCGCTTATCAAATGCAGAG
AATAGCAGTTTCACTGCCAACATTTAGTGGGTGAGAAATGTTTCAATGTTTTAGGTCAGA
ACAATAAATTGGTTTCATTTCTTTCTTTTATATGGTGGTTTAGATACATGAATCATTAGC
CAAAACCCTTTTTTGGGGGGAAAATATCAGCTGAGATAACTAATTTTTTTGAACCCTACA
AAAACATCGAGATAAACCTGTAAATAAAGCTAGTAACATATATTCATACCTGCTGTGCAC
TTGGGTGAGAAATAGGGCAGTGGAAGAATCACGAAAGATGTTTTAACCTACCTGTGAACT
CTGTGTTGTAGAAAACGCCTTTCAAATGATCGACGGGACTTGAACTCAAAGCATGTGAAG
TGGATAGTAGGTGTGTGGTGGTATGAAAAGAATGCAGTGCCTTTCCCCATTACTCCCTGA
TGGAACTGTCACATGAGGTTAACATCTGTCATTTTTTTCTAGGTGTGTCATGTGTATGTC
TGGTTGATAGGTATTCTGTTTTGGCCTTACAATACCATAGCAAGATTTGTCCCTTTGAAA
TACCTAACGCCAAGTAACAATGCATGCTTTGGAAATGCAGAAGAGGATTTTCTTGAAGGA
GCAAATACATTTGGTTGCTCATATCAAGAAAACTGACCGAATGTTCTCCAAACCCTGTTT
ACAGTACTTGGTGGGGCATGGGGGGCAGGTGAGGGAGAGACCATTGCATAGCGTTCAAGT
GTTCCTAGTTAAGTGCTTTTCAACTGGAGAGGCTAACCTCAAGATATTTTTTTTAACTGC
ATTCTGTAATAAATCAACACAATATGCTCTTTATGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTCCCCCTCCATGTTCTAATGTTTGTGCATGTATATTACTGATTTTCGGAACTAACC
TTTGTTCGTGTATAGAGTTACGCCACTGTTGTTTTGCACCTTTGGGGAAGATAGAGAAGC
ATTAGAAATATCTGTCCACCTTTCCAGGTTCCTGACTGTCTTTGCAACAGCACACACAGG
TGGGAAAACACCTGGAGTACATTCATTCAGCATCCTCTGCGAAGCAACCTAGAACCTGTG
CTTTTGCAAAAGAAGTCGATCTGAAAGTCCGAGCTAGCGTTGCGCTTATCAAATGCAGAG
AATAGCAGTTTCACTGCCAACATTTAGTGGGTGAGAAATGTTTCAATGTTTTAGGTCAGA
ACAATAAATTGGTTTCATTTCTTTCTTTTATATGGTGGTTTAGATACATGAATCATTAGC
CAAAACCCTTTTTTGGGGGGAAAATATCAGCTGAGATAACTAATTTTTTTGAACCCTACA
AAAACATCGAGATAAACCTGTAAATAAAGCTAGTAACATATATTCATACCTGCTGTGCAC
TTGGGTGAGAAATAGGGCAGTGGAAGAATCACGAAAGATGTTTTAACCTACCTGTGAACT
CTGTGTTGTAGAAAACGCCTTTCAAATGATCGACGGGACTTGAACTCAAAGCATGTGAAG
TGGATAGTAGGTGTGTGGTGGTATGAAAAGAATGCAGTGCCTTTCCCCATTACTCCCTGA
TGGAACTGTCACATGAGGTTAACATCTGTCATTTTTTTCTAGGTGTGTCATGTGTATGTC
TGGTTGATAGGTATTCTGTTTTGGCCTTACAATACCATAGCAAGATTTGTCCCTTTGAAA
TACCTAACGCCAAGTAACAATGCATGCTTTGGAAATGCAGAAGAGGATTTTCTTGAAGGA
GCAAATACATTTGGTTGCTCATATCAAGAAAACTGACCGAATGTTCTCCAAACCCTGTTT
ACAGTACTTGGTGGGGCATGGGGGGCAGGTGAGGGAGAGACCATTGCATAGCGTTCAAGT
GTTCCTAGTTAAGTGCTTTTCAACTGGAGAGGCTAACCTCAAGATATTTTTTTTAACTGC
ATTCTGTAATAAATCAACACAATATGCTCTTTATGG

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               2-1116, gnl|bosTau2|chr14 (27641837-27640724)
               

               
               2-1116, gnl|Hg17|chr21 (34811771-34810656)
               

               
               2-1116, gnl|Mm7|chr16 (92445596-92444572)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-1116, gnl|bosTau2|chr14 (27641837-27640724)
               

               
               2-1116, gnl|Hg17|chr21 (34811771-34810656)
               

               
               2-1116, gnl|Mm7|chr16 (92445596-92444572)

Expressed library(ies): 30 entry(ies)

More info

Expressed library(ies): 30 entry(ies)

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               cbr (2.81546)
               

               
               vin (1.66279)
               

               
               sug (1.4002)
               

               
               isp (0.75188)
               

               
               sme (0.610874)
               

               
               sto (0.539471)
               

               
               ssp (0.406559)
               

               
               ste (0.405625)
               

               
               ski (0.29347)
               

               
               lin (0.291206)
               

               
               csk (0.281492)
               

               
               ute (0.265569)
               

               
               cbe (0.239234)
               

               
               ece (0.229305)
               

               
               cmu (0.186393)
               

               
               fbs (0.175346)
               

               
               rec (0.17307)
               

               
               duo (0.172801)
               

               
               fhi (0.169578)
               

               
               nco (0.161734)
               

               
               mga (0.160205)
               

               
               tbr (0.154178)
               

               
               bfe (0.149858)
               

               
               lnt (0.142308)
               

               
               che (0.136314)
               

               
               lyg (0.133103)
               

               
               ret (0.128733)
               

               
               eru (0.120048)
               

               
               ecc (0.115035)
               

               
               ldo (0.0970026)

Expressed library(ies): 30 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbr (2.81546)
               

               
               vin (1.66279)
               

               
               sug (1.4002)
               

               
               isp (0.75188)
               

               
               sme (0.610874)
               

               
               sto (0.539471)
               

               
               ssp (0.406559)
               

               
               ste (0.405625)
               

               
               ski (0.29347)
               

               
               lin (0.291206)
               

               
               csk (0.281492)
               

               
               ute (0.265569)
               

               
               cbe (0.239234)
               

               
               ece (0.229305)
               

               
               cmu (0.186393)
               

               
               fbs (0.175346)
               

               
               rec (0.17307)
               

               
               duo (0.172801)
               

               
               fhi (0.169578)
               

               
               nco (0.161734)
               

               
               mga (0.160205)
               

               
               tbr (0.154178)
               

               
               bfe (0.149858)
               

               
               lnt (0.142308)
               

               
               che (0.136314)
               

               
               lyg (0.133103)
               

               
               ret (0.128733)
               

               
               eru (0.120048)
               

               
               ecc (0.115035)
               

               
               ldo (0.0970026)

	2-1116, gnl\|bosTau2\|chr14 (27641837-27640724)
	2-1116, gnl\|Hg17\|chr21 (34811771-34810656)
	2-1116, gnl\|Mm7\|chr16 (92445596-92444572)

	cbr (2.81546)
	vin (1.66279)
	sug (1.4002)
	isp (0.75188)
	sme (0.610874)
	sto (0.539471)
	ssp (0.406559)
	ste (0.405625)
	ski (0.29347)
	lin (0.291206)
	csk (0.281492)
	ute (0.265569)
	cbe (0.239234)
	ece (0.229305)
	cmu (0.186393)
	fbs (0.175346)
	rec (0.17307)
	duo (0.172801)
	fhi (0.169578)
	nco (0.161734)
	mga (0.160205)
	tbr (0.154178)
	bfe (0.149858)
	lnt (0.142308)
	che (0.136314)
	lyg (0.133103)
	ret (0.128733)
	eru (0.120048)
	ecc (0.115035)
	ldo (0.0970026)