Non-Coding RNA Search

Ss1.1-rlin30_b9.5

Sequence:


               
               TTTTTAATGGGGTAAATGTTAGTCTTCTTTTTCAAAATATTTTCACTTATATTTGTGCAT
TTATTCTTCCAGATAAACTTTAGCTATATTTTAGTCAGTTTCCAAAAGAAATTCTATTCT
AAAGCATTTTGTTTGGAATTGCTTTAACATTATAGACTAATTGTGGGAGAATTGCTGTTT
TTGTAATGTTAATTTTTTCATTCAGGAACTTGTCACATGCCAACGTTATTGAAGGATTTC
TATATAATTCTCAGTAATTTTGTAGGCCCTGCATATTTCTTGTTAATTATATTATTAGAT
ATTTCATATCTTTGTTGAGATCATTTTCTCTTTATGTTTTATAACTAGTTTCTCCTTGTT
GGGTCAAGCTATTGATTTCTACATTAGGTAACTTTTCTGAACTCTTTCATTAATTGTTTT
AGTTGATTCTAAGTAGACGATCATTTGAAGTATAATGGTAATTTTCTCTCTTTATAATAT
TAATATCTCATATTTTAAATAAATGATGGTATTAATTTTGCTTTTATTCCAGACTTTTTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTAATGGGGTAAATGTTAGTCTTCTTTTTCAAAATATTTTCACTTATATTTGTGCAT
TTATTCTTCCAGATAAACTTTAGCTATATTTTAGTCAGTTTCCAAAAGAAATTCTATTCT
AAAGCATTTTGTTTGGAATTGCTTTAACATTATAGACTAATTGTGGGAGAATTGCTGTTT
TTGTAATGTTAATTTTTTCATTCAGGAACTTGTCACATGCCAACGTTATTGAAGGATTTC
TATATAATTCTCAGTAATTTTGTAGGCCCTGCATATTTCTTGTTAATTATATTATTAGAT
ATTTCATATCTTTGTTGAGATCATTTTCTCTTTATGTTTTATAACTAGTTTCTCCTTGTT
GGGTCAAGCTATTGATTTCTACATTAGGTAACTTTTCTGAACTCTTTCATTAATTGTTTT
AGTTGATTCTAAGTAGACGATCATTTGAAGTATAATGGTAATTTTCTCTCTTTATAATAT
TAATATCTCATATTTTAAATAAATGATGGTATTAATTTTGCTTTTATTCCAGACTTTTTA

Aligned organism(s): 11 entry(ies)

More info

Aligned organism(s): 11 entry(ies)

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               1-540, gnl|bosTau2|chr4 (48339345-48338802)
               

               
               1-540, gnl|canFam2|chr14 (11872411-11870977)
               

               
               1-540, gnl|echTel1|scaffold_267393 (5544-6883)
               

               
               1-540, gnl|hg17|chr7 (126577776-126579198)
               

               
               1-540, gnl|Hg17|chr7 (126578608-126578047)
               

               
               1-540, gnl|mm7|chr6 (28143714-28145105)
               

               
               1-540, gnl|Mm7|chr6 (28144545-28144003)
               

               
               1-540, gnl|oryCun1|scaffold_208342 (28508-27061)
               

               
               1-540, gnl|panTro1|chr6 (128990659-128992078)
               

               
               1-540, gnl|rheMac2|chr3 (164903803-164905231)
               

               
               1-540, gnl|rn3|chr4 (55258582-55259980)

Aligned organism(s): 11 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-540, gnl|bosTau2|chr4 (48339345-48338802)
               

               
               1-540, gnl|canFam2|chr14 (11872411-11870977)
               

               
               1-540, gnl|echTel1|scaffold_267393 (5544-6883)
               

               
               1-540, gnl|hg17|chr7 (126577776-126579198)
               

               
               1-540, gnl|Hg17|chr7 (126578608-126578047)
               

               
               1-540, gnl|mm7|chr6 (28143714-28145105)
               

               
               1-540, gnl|Mm7|chr6 (28144545-28144003)
               

               
               1-540, gnl|oryCun1|scaffold_208342 (28508-27061)
               

               
               1-540, gnl|panTro1|chr6 (128990659-128992078)
               

               
               1-540, gnl|rheMac2|chr3 (164903803-164905231)
               

               
               1-540, gnl|rn3|chr4 (55258582-55259980)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

Help | Less info


               
               mga (0.32041)
               

               
               lin (0.145603)

Expressed library(ies): 2 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mga (0.32041)
               

               
               lin (0.145603)

	1-540, gnl\|bosTau2\|chr4 (48339345-48338802)
	1-540, gnl\|canFam2\|chr14 (11872411-11870977)
	1-540, gnl\|echTel1\|scaffold_267393 (5544-6883)
	1-540, gnl\|hg17\|chr7 (126577776-126579198)
	1-540, gnl\|Hg17\|chr7 (126578608-126578047)
	1-540, gnl\|mm7\|chr6 (28143714-28145105)
	1-540, gnl\|Mm7\|chr6 (28144545-28144003)
	1-540, gnl\|oryCun1\|scaffold_208342 (28508-27061)
	1-540, gnl\|panTro1\|chr6 (128990659-128992078)
	1-540, gnl\|rheMac2\|chr3 (164903803-164905231)
	1-540, gnl\|rn3\|chr4 (55258582-55259980)