Non-Coding RNA Search

Ss1.1-rlin30_e10.5

Sequence:


               
               CATCCCAGCCTGCATGGACTGCACGGTTCCGTGCCACGAGTCACTGGGGTGGTTTCGGCT
CTCTTGTATGGAGACAAGTCAGAAATACAAAGTGATGAGGTGAACTGATGGAGGTTGAAA
TTGGCAAAGATCAGACACCTTTTTAGACAGGTGTTCTGGAGTAGCACTGACAACACGGTT
CACCCAGTATTTCATGACAATGGACGGTGACAGTTCTACAACAGATGCTTCTCAACTCGG
AATTTCTGCAGACTATATTGGAGGAAGTCATTATGTCATACAGCCTCATGATGATACTGA
GGACAGCATGAATGATCATGAAGACACAAATGGTTCAAAAGAAAGTTTTAGAGAACAAGA
TATATATCTTCCAATTGCAAATGTTGCAAGGATAATGAAAAATGCCATACCTCAAACGGG
AAAGATTGCAAAAGATGCCAAAGAATGTGTTCAAGAGTGTGTGAGTGAGTTCATCAGCTT
TATCACATCTGAAGCAAGTGAGAGATGCCATCAAGAGAAACGGAAGACAATCAATGGGGA
AGATATTCTCTTCGCCATGTCTACTCTGGGCTTTGACAGTTATGTAGAACCTCTGAAGTT
GTACCTTCAGAAGTTCAGAGAGGCTATGAAAGGAGAGAAGGGAATTGGTGGAGCAGTCAC
AGCTACAGATGGACTGAGTGAAGAGCTTACAGAAGAGGCATTTACGAACCAGTTGCCAGC
TGGCTTAATAACCGCAGATGGTCAGCAACAAAATGTCATGGTTTACACAACATCATATCA
ACAGATCTCTGGTGTTCAGCAAATTCAGTTTTCATGATCTGAAGAAATGACGGAGTGGAG
AATGTAGAAAAGTGAAGGTGTATGATTCTGGAACAGAGACATTAGAAGGACATGACTGGT
GAAAAGATGTCTCTTTGTATATTAAATAGCTGTAATGTAGCTTCCCAATGCTTGACTAAT
TGAGGTGTTAATTCTGACTTGAGAATCTTTTTCATGAATGATTTTAAAGAAAAATTTGAA
TTTTAAAGGTATTAAAATATTTTTGTTTTGTACGAGAGTTTGTTGCTCTGTATGACTCCT
GTATGCATTGTATATTGCAATTTATTACTGTCAGAGATTTGTAGACAGTTTCTTATTTTC
ATATTGAATCATGTTACTTTTGTAATTCAAGTAAGCAGCTGGGTTAATTCATGTTTGCCC
TTTTAATAAAATATAAGGGTAGAGTTCATTTTGAATGCAAGTTGCCTTTATTATAAATTT
GAGTTTGTCTTAGTTACATAATATCTTGCATGATAACCTAGCTAGATTTTTAGCATTTAC
CATATTTATTAAAATTAATTTTTTGTAAAACATTCATAGTTTAAACAGCACCATTTTTTA
AAAAATGTAACTGAAAAATTAAGTGTGAATGCAGAAGAAAACATTGTCTGCGCGATTCAA
CTTGGTGCCCGTTAACAGTGTTTACACTGTCCCTTGTGCCTGTTAAGATAGTTTGTTTAT
TGGCGCTTTTGTTAAGACTAGATTTGTTTTTGAGTTATGTTCGTATGTGTTGGAATCCAT
TTGAGTTTAATGTAGTCCTAGTGCTCTTGAAATGGTGCCCCTTTCATTTCGAATATGATT
TTTCCAAAGCCTATCTTCCAATGCTATATAGTATCCTCTTCCAGAAGAGGGACTGTGTAG
TCTGATAGTGAATGTCCTCGTTTTACCTGTTTAACTGAAATGTCGCGTTTCCTCTTATGC
TGTGGGAACCAAGAAACGTCAGACGACATTGTGTGTGTACAGACCTTTTCTGCCTGGGTT
GAGTGAATGAAATGCAGAGCAGAGTGAGTGCTGTGAATGGCGTGAAAGAGAAGTCACCAA
CTTCTCGTGTGCTGTCTTGATCTTTGCAATAAACTAAACTTAGATAATGTAATTTTGTAT
AATTTACTAGTATATACTTGGGTTGTTCCTTTTTTAAAGTGAGGATTTGTATTTTCCCAC
CTGTTCTTTTCGGTGATAATTAACGTCTATGTGTTTTTTGTTAAATCAGTTGCTCTTGTA
GTTTGCCTAACAGGCACTTTGAGTGAATGTCACCTTGGAAGGACACTCAGATTTATAAGG
GAGAAGCAATTTCCCAGATACAGGCTGGACAGAAACATTTACTCCGCTGGAAGGAGCTAT
TGGGGGCACAGCTGGGATCATCTGAAGTTAATCACTCCCTCACTACCTTCCCATTTAAAA
AATAATTCATTACAGAAAATTCGAATAGGCAAAAAAGGGTGGTTAAGCAACCATCATCCT
AATATGTTAAAATAAGCAGTGTTAATATTTTGGTAATTATCGTTTGTCCTTTTACTTTGC
TAAATATGTATATTTTTATAAAAATGGGTTCATACTTGCATACTGTTTTGTAATCTGCTT
TTTTCACTTAACAATATATTGTGACCATCTTTCCCAGGACATTATATAGTCTTCTACTTT
TATTTGTTTATTATTCTGTTGTATGGCTGAAACATAATTTATTTAATCCTTTATTGAACA
TTTTAACTATATACATCTTTCACAGTTATAAACAACACTTCACTGAATCTTGTGTACATC
CATGACTGTTTTCTTCAAATAAATTTTTTAAATTCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CATCCCAGCCTGCATGGACTGCACGGTTCCGTGCCACGAGTCACTGGGGTGGTTTCGGCT
CTCTTGTATGGAGACAAGTCAGAAATACAAAGTGATGAGGTGAACTGATGGAGGTTGAAA
TTGGCAAAGATCAGACACCTTTTTAGACAGGTGTTCTGGAGTAGCACTGACAACACGGTT
CACCCAGTATTTCATGACAATGGACGGTGACAGTTCTACAACAGATGCTTCTCAACTCGG
AATTTCTGCAGACTATATTGGAGGAAGTCATTATGTCATACAGCCTCATGATGATACTGA
GGACAGCATGAATGATCATGAAGACACAAATGGTTCAAAAGAAAGTTTTAGAGAACAAGA
TATATATCTTCCAATTGCAAATGTTGCAAGGATAATGAAAAATGCCATACCTCAAACGGG
AAAGATTGCAAAAGATGCCAAAGAATGTGTTCAAGAGTGTGTGAGTGAGTTCATCAGCTT
TATCACATCTGAAGCAAGTGAGAGATGCCATCAAGAGAAACGGAAGACAATCAATGGGGA
AGATATTCTCTTCGCCATGTCTACTCTGGGCTTTGACAGTTATGTAGAACCTCTGAAGTT
GTACCTTCAGAAGTTCAGAGAGGCTATGAAAGGAGAGAAGGGAATTGGTGGAGCAGTCAC
AGCTACAGATGGACTGAGTGAAGAGCTTACAGAAGAGGCATTTACGAACCAGTTGCCAGC
TGGCTTAATAACCGCAGATGGTCAGCAACAAAATGTCATGGTTTACACAACATCATATCA
ACAGATCTCTGGTGTTCAGCAAATTCAGTTTTCATGATCTGAAGAAATGACGGAGTGGAG
AATGTAGAAAAGTGAAGGTGTATGATTCTGGAACAGAGACATTAGAAGGACATGACTGGT
GAAAAGATGTCTCTTTGTATATTAAATAGCTGTAATGTAGCTTCCCAATGCTTGACTAAT
TGAGGTGTTAATTCTGACTTGAGAATCTTTTTCATGAATGATTTTAAAGAAAAATTTGAA
TTTTAAAGGTATTAAAATATTTTTGTTTTGTACGAGAGTTTGTTGCTCTGTATGACTCCT
GTATGCATTGTATATTGCAATTTATTACTGTCAGAGATTTGTAGACAGTTTCTTATTTTC
ATATTGAATCATGTTACTTTTGTAATTCAAGTAAGCAGCTGGGTTAATTCATGTTTGCCC
TTTTAATAAAATATAAGGGTAGAGTTCATTTTGAATGCAAGTTGCCTTTATTATAAATTT
GAGTTTGTCTTAGTTACATAATATCTTGCATGATAACCTAGCTAGATTTTTAGCATTTAC
CATATTTATTAAAATTAATTTTTTGTAAAACATTCATAGTTTAAACAGCACCATTTTTTA
AAAAATGTAACTGAAAAATTAAGTGTGAATGCAGAAGAAAACATTGTCTGCGCGATTCAA
CTTGGTGCCCGTTAACAGTGTTTACACTGTCCCTTGTGCCTGTTAAGATAGTTTGTTTAT
TGGCGCTTTTGTTAAGACTAGATTTGTTTTTGAGTTATGTTCGTATGTGTTGGAATCCAT
TTGAGTTTAATGTAGTCCTAGTGCTCTTGAAATGGTGCCCCTTTCATTTCGAATATGATT
TTTCCAAAGCCTATCTTCCAATGCTATATAGTATCCTCTTCCAGAAGAGGGACTGTGTAG
TCTGATAGTGAATGTCCTCGTTTTACCTGTTTAACTGAAATGTCGCGTTTCCTCTTATGC
TGTGGGAACCAAGAAACGTCAGACGACATTGTGTGTGTACAGACCTTTTCTGCCTGGGTT
GAGTGAATGAAATGCAGAGCAGAGTGAGTGCTGTGAATGGCGTGAAAGAGAAGTCACCAA
CTTCTCGTGTGCTGTCTTGATCTTTGCAATAAACTAAACTTAGATAATGTAATTTTGTAT
AATTTACTAGTATATACTTGGGTTGTTCCTTTTTTAAAGTGAGGATTTGTATTTTCCCAC
CTGTTCTTTTCGGTGATAATTAACGTCTATGTGTTTTTTGTTAAATCAGTTGCTCTTGTA
GTTTGCCTAACAGGCACTTTGAGTGAATGTCACCTTGGAAGGACACTCAGATTTATAAGG
GAGAAGCAATTTCCCAGATACAGGCTGGACAGAAACATTTACTCCGCTGGAAGGAGCTAT
TGGGGGCACAGCTGGGATCATCTGAAGTTAATCACTCCCTCACTACCTTCCCATTTAAAA
AATAATTCATTACAGAAAATTCGAATAGGCAAAAAAGGGTGGTTAAGCAACCATCATCCT
AATATGTTAAAATAAGCAGTGTTAATATTTTGGTAATTATCGTTTGTCCTTTTACTTTGC
TAAATATGTATATTTTTATAAAAATGGGTTCATACTTGCATACTGTTTTGTAATCTGCTT
TTTTCACTTAACAATATATTGTGACCATCTTTCCCAGGACATTATATAGTCTTCTACTTT
TATTTGTTTATTATTCTGTTGTATGGCTGAAACATAATTTATTTAATCCTTTATTGAACA
TTTTAACTATATACATCTTTCACAGTTATAAACAACACTTCACTGAATCTTGTGTACATC
CATGACTGTTTTCTTCAAATAAATTTTTTAAATTCT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|60656481|gb|AAX32804.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|60656481|gb|AAX32804.1|

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               887-1052, gnl|bosTau2|chr2 (41658964-41658799)
               

               
               887-1052, gnl|Hg17|chr12 (103015904-103015747)
               

               
               887-1052, gnl|Mm7|chr10 (82291839-82291687)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               887-1052, gnl|bosTau2|chr2 (41658964-41658799)
               

               
               887-1052, gnl|Hg17|chr12 (103015904-103015747)
               

               
               887-1052, gnl|Mm7|chr10 (82291839-82291687)

Expressed library(ies): 28 entry(ies)

More info

Expressed library(ies): 28 entry(ies)

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               thg (0.507164)
               

               
               spl (0.429553)
               

               
               rec (0.346141)
               

               
               eye (0.341006)
               

               
               vin (0.332557)
               

               
               liv (0.292569)
               

               
               lin (0.291206)
               

               
               lnt (0.284616)
               

               
               fce (0.271592)
               

               
               kid (0.259471)
               

               
               ret (0.257467)
               

               
               tra (0.246184)
               

               
               mgp (0.230681)
               

               
               hea (0.204499)
               

               
               fli (0.202881)
               

               
               cmu (0.186393)
               

               
               sag (0.182715)
               

               
               gul (0.177588)
               

               
               fty (0.17584)
               

               
               sin (0.174948)
               

               
               fhi (0.169578)
               

               
               isp (0.150376)
               

               
               csk (0.140746)
               

               
               lyg (0.133103)
               

               
               ova (0.129132)
               

               
               eep (0.122564)
               

               
               ecc (0.115035)
               

               
               ldo (0.0970026)

Expressed library(ies): 28 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               thg (0.507164)
               

               
               spl (0.429553)
               

               
               rec (0.346141)
               

               
               eye (0.341006)
               

               
               vin (0.332557)
               

               
               liv (0.292569)
               

               
               lin (0.291206)
               

               
               lnt (0.284616)
               

               
               fce (0.271592)
               

               
               kid (0.259471)
               

               
               ret (0.257467)
               

               
               tra (0.246184)
               

               
               mgp (0.230681)
               

               
               hea (0.204499)
               

               
               fli (0.202881)
               

               
               cmu (0.186393)
               

               
               sag (0.182715)
               

               
               gul (0.177588)
               

               
               fty (0.17584)
               

               
               sin (0.174948)
               

               
               fhi (0.169578)
               

               
               isp (0.150376)
               

               
               csk (0.140746)
               

               
               lyg (0.133103)
               

               
               ova (0.129132)
               

               
               eep (0.122564)
               

               
               ecc (0.115035)
               

               
               ldo (0.0970026)

	887-1052, gnl\|bosTau2\|chr2 (41658964-41658799)
	887-1052, gnl\|Hg17\|chr12 (103015904-103015747)
	887-1052, gnl\|Mm7\|chr10 (82291839-82291687)

	thg (0.507164)
	spl (0.429553)
	rec (0.346141)
	eye (0.341006)
	vin (0.332557)
	liv (0.292569)
	lin (0.291206)
	lnt (0.284616)
	fce (0.271592)
	kid (0.259471)
	ret (0.257467)
	tra (0.246184)
	mgp (0.230681)
	hea (0.204499)
	fli (0.202881)
	cmu (0.186393)
	sag (0.182715)
	gul (0.177588)
	fty (0.17584)
	sin (0.174948)
	fhi (0.169578)
	isp (0.150376)
	csk (0.140746)
	lyg (0.133103)
	ova (0.129132)
	eep (0.122564)
	ecc (0.115035)
	ldo (0.0970026)