Non-Coding RNA Search

Ss1.1-rlin30_k16.5

Sequence:


               
               TAGTATAGTGCGTGATTTAGAAGCCTCCAACAATGCAAATGAGGTATATCATGGAACTCA
CACTCGGGGGATCTTTTCACTCCATTTTGCATGTTTTGAAATGGAGATAAATATGGTGAG
GTCTCAGAAGGGAAATGGCCAGAATCCCCAAAGCCTGTAATATAAGTAAATACGCATTAA
GAATTCTAGATCCATTATACCTAAAGGGCAAATAATTCTTTACTAATATATTCTTTAATT
TGGGAGACCCAAAGATTGACAGCCATTAATTTCAGATTGTCATACAAGAGCCAGGCTGCA
AAGGTCTAGGTGTATCAGGATCACTACAGTTTGTTTCCACCAATAGTAGCCCCTTGGCAC
TGCTGTCGTCATTAGGAAAAGCTAGTGTGGCTTCAGTCAAGGATGTTTTACAATGGCAAG
TCCAAGATAAGATGCACCCATTAGAAAGGTTTGTCTTCAAATAGTGCCCCTAACTGGGAT
AGCAAATAGTTTGAGATAATAGACTGTCCGTTTCTAGGCAAGGAGAATTGCATTGAATTC
AAGTCTCTTTTGTTAGACTTAATGTATCTAGCCAGTGTGATTTATGAGAGCTCCCCCATT
TACTTCATAGGTAGATACGCTGTTTGAAATATTGCGCACATTTGCTTTGAATTTTATCTC
TTGCTGTCGTTTTGTATTTGTCCTTTGAATAAAATTGTAAACCCAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TAGTATAGTGCGTGATTTAGAAGCCTCCAACAATGCAAATGAGGTATATCATGGAACTCA
CACTCGGGGGATCTTTTCACTCCATTTTGCATGTTTTGAAATGGAGATAAATATGGTGAG
GTCTCAGAAGGGAAATGGCCAGAATCCCCAAAGCCTGTAATATAAGTAAATACGCATTAA
GAATTCTAGATCCATTATACCTAAAGGGCAAATAATTCTTTACTAATATATTCTTTAATT
TGGGAGACCCAAAGATTGACAGCCATTAATTTCAGATTGTCATACAAGAGCCAGGCTGCA
AAGGTCTAGGTGTATCAGGATCACTACAGTTTGTTTCCACCAATAGTAGCCCCTTGGCAC
TGCTGTCGTCATTAGGAAAAGCTAGTGTGGCTTCAGTCAAGGATGTTTTACAATGGCAAG
TCCAAGATAAGATGCACCCATTAGAAAGGTTTGTCTTCAAATAGTGCCCCTAACTGGGAT
AGCAAATAGTTTGAGATAATAGACTGTCCGTTTCTAGGCAAGGAGAATTGCATTGAATTC
AAGTCTCTTTTGTTAGACTTAATGTATCTAGCCAGTGTGATTTATGAGAGCTCCCCCATT
TACTTCATAGGTAGATACGCTGTTTGAAATATTGCGCACATTTGCTTTGAATTTTATCTC
TTGCTGTCGTTTTGTATTTGTCCTTTGAATAAAATTGTAAACCCAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               116-215, - strand, RNAz p=0.914172

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               116-215, - strand, RNAz p=0.914172

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               77-592, gnl|bosTau2|chr11 (48994899-48995422)
               

               
               77-592, gnl|Hg17|chr2 (69459222-69458683)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               77-592, gnl|bosTau2|chr11 (48994899-48995422)
               

               
               77-592, gnl|Hg17|chr2 (69459222-69458683)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               lyg (0.399308)
               

               
               lin (0.291206)
               

               
               tra (0.246184)
               

               
               eye (0.170503)
               

               
               ski (0.146735)
               

               
               kid (0.129735)
               

               
               ova (0.129132)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lyg (0.399308)
               

               
               lin (0.291206)
               

               
               tra (0.246184)
               

               
               eye (0.170503)
               

               
               ski (0.146735)
               

               
               kid (0.129735)
               

               
               ova (0.129132)

	77-592, gnl\|bosTau2\|chr11 (48994899-48995422)
	77-592, gnl\|Hg17\|chr2 (69459222-69458683)

	lyg (0.399308)
	lin (0.291206)
	tra (0.246184)
	eye (0.170503)
	ski (0.146735)
	kid (0.129735)
	ova (0.129132)