Non-Coding RNA Search

Ss1.1-rlin30_p15.5

Sequence:


               
               TTTCTAAGAGGTAGAGTCTTACAATCGAATCTTGTGCTGATGTCACTTTGGAATATGGCC
TTGAGCCAGTAACCTTTGTACTAGGTTTCAGGAAAATCTTTGCTGAAATTTGAGCCTCAG
TGGACTCTGCTGTGGTTCTTAAATGTTTATACTATATTTCTAAGTTCTTTGGGGCAGATT
AACTATATGTAGGTAGATCATCTTTTTAAAAACTCTTCAATACAAAATTGTATCATATAA
AATGGACCCAAATCTTCAAAAGAAGTTTACAGTTCATATAGCATTGATAATCTTCGGGTG
AACACTTAGTGATCATTTAAAGAGTTTGCTGATGGTAGAACATTGCTTTAATGAATTAAG
TATCTGGGATTATTCTTTGAAAACATGATCCCATAATTTTTAGAAAGAAGGATGACTTAT
TTTGTCTTATTCTTAAGTAAAATGTGCCAATTAAACTTTTGTGGACTATACACATGAAAT
TAACTTCATAGCAAGAATGACTAGGCTTAACTAACACAATAATTTTTTAAAGAGAGATTG
TTTTAAAAAGACTATTATGTAACTGAGGGAGAAGTAATTTAATTATGTAACTGTGAATGG
GAAAGTTTTGTGCTGTGCAGGTCATTTATTTTAGGTGTTGCTGGGGCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTCTAAGAGGTAGAGTCTTACAATCGAATCTTGTGCTGATGTCACTTTGGAATATGGCC
TTGAGCCAGTAACCTTTGTACTAGGTTTCAGGAAAATCTTTGCTGAAATTTGAGCCTCAG
TGGACTCTGCTGTGGTTCTTAAATGTTTATACTATATTTCTAAGTTCTTTGGGGCAGATT
AACTATATGTAGGTAGATCATCTTTTTAAAAACTCTTCAATACAAAATTGTATCATATAA
AATGGACCCAAATCTTCAAAAGAAGTTTACAGTTCATATAGCATTGATAATCTTCGGGTG
AACACTTAGTGATCATTTAAAGAGTTTGCTGATGGTAGAACATTGCTTTAATGAATTAAG
TATCTGGGATTATTCTTTGAAAACATGATCCCATAATTTTTAGAAAGAAGGATGACTTAT
TTTGTCTTATTCTTAAGTAAAATGTGCCAATTAAACTTTTGTGGACTATACACATGAAAT
TAACTTCATAGCAAGAATGACTAGGCTTAACTAACACAATAATTTTTTAAAGAGAGATTG
TTTTAAAAAGACTATTATGTAACTGAGGGAGAAGTAATTTAATTATGTAACTGTGAATGG
GAAAGTTTTGTGCTGTGCAGGTCATTTATTTTAGGTGTTGCTGGGGCA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               40-158, + strand, RNAz p=0.940117

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               40-158, + strand, RNAz p=0.940117

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-542, gnl|bosTau2|chr1 (87866157-87866711)
               

               
               1-542, gnl|Hg17|chr10 (52156623-52156007)
               

               
               1-542, gnl|Mm7|chr18 (46618932-46618390)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-542, gnl|bosTau2|chr1 (87866157-87866711)
               

               
               1-542, gnl|Hg17|chr10 (52156623-52156007)
               

               
               1-542, gnl|Mm7|chr18 (46618932-46618390)

Expressed library(ies): 9 entry(ies)

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Expressed library(ies): 9 entry(ies)

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               cty (0.20816)
               

               
               duo (0.172801)
               

               
               mga (0.160205)
               

               
               bfe (0.149858)
               

               
               liv (0.146284)
               

               
               lin (0.145603)
               

               
               lyg (0.133103)
               

               
               kid (0.129735)
               

               
               jej (0.0989218)

Expressed library(ies): 9 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cty (0.20816)
               

               
               duo (0.172801)
               

               
               mga (0.160205)
               

               
               bfe (0.149858)
               

               
               liv (0.146284)
               

               
               lin (0.145603)
               

               
               lyg (0.133103)
               

               
               kid (0.129735)
               

               
               jej (0.0989218)

	1-542, gnl\|bosTau2\|chr1 (87866157-87866711)
	1-542, gnl\|Hg17\|chr10 (52156623-52156007)
	1-542, gnl\|Mm7\|chr18 (46618932-46618390)

	cty (0.20816)
	duo (0.172801)
	mga (0.160205)
	bfe (0.149858)
	liv (0.146284)
	lin (0.145603)
	lyg (0.133103)
	kid (0.129735)
	jej (0.0989218)