Ss1.1-rlin32_g21.5.5
|
GGAGGTCTGCTCTACGCTGTAGGGGGTTATGATGGAGCTTCACGCCAGTGTCTCAGCACA
GTAGAATGCTACAATGCTACAGCGAATGAGTGGACCTATATAGCGGAAATGAGCACCAGG
CGAAGTGGAGCAGGTGTTGGTGTGTTAAACAACTTATTGTATGCTGTAGGAGGTCATGAT
GGCCCTTTAGTACGAAAAAGTGTTGAAGTGTATGATCCTGCCAGCAACACTTGGAGACAG
GTTGCAGATATGAACATGTGCAGAAGAAATGCAGGTGTTTGTGCAGTTAACGGTCTGTTA
TACGTAGTTGGAGGGGATGATGGTTCCTGTAATTTGGCATCAGTAGAATATTATAATCCA
ACAACTGATAAATGGACAGTCGTGTCATCTTGTATGAGCACAGGAAGAAGTTATGCAGGG
GTCACAGTTATTGATAAACCATTATGAGCCTAAAGGACATTTTCGGCACATTTCCACATG
AGAAGCAGGCTTCAACAAGTACTTCTGAAGTTGCCGAGAGTCTAGCACTTCTCCACTTGT
AGCTGCACTTTAAGTCTCAGCAGAAGATAAGATCATCTGCCTTTATAGGCCTCACATACT
GAAGATTATTTTTGGTAGATGCACCGTGTAGGCTTTTTCTGCAACGAGCAGCAGCTGACT
GAATTTTAATAAGAAACTTGGACTGCAGTATTATTCTGTGGTTTCTGGACAACAGTTGCT
TCCATAAAGACTAGTTACCAACCTTGAGTGACCATGGGTTATTTTGTGAAGGGAGATAAA
GTAATATGTGTTCTTGTAAAATTAAATTTCATCTTTATTCCTTCTCTTGAAAATCTGTAT
ACACAGGAACTGAAAATCTTTGAACAGGCATTAAAATCTATGTAAGTATACAAACTAGTC
GAGGGATAAAACTGCTTTTATAAAATATGTTTGATTACATGAGTATAATAAATTGTGTGC
ATATAAATGTGTGTCTATATGCTTTCCTTTAAATATGTTTGAAAAGATGTTTGAAACTTG
ATTATACTATTTATAATTGGCACAGTACTTTGAATTATGCCAGTACTACATTGTAAAACA
GAGTTGTATTTTTTGATATTTAACATTGCTTAACACTTTAAAATGCCACTTCTGAGGAAT
GAACATGGTGTAACACACTTGAATAAATGTGTGATGCCAAACTTTTTTAAATAAAGTATA
AATTATGCTTATTTATTATTTTCCTTGGTTTAATCTTGGTCATGTTTTGGTGTGTATTTC
TAATTTTTTTTCTTAAAGTAACACTTTGGCATGAACATTACTGCAGGTTTTTGATGAATT
TAATGAATGTATGGAATTCAACTGAATTTGCATGGTCTTAAGAATTTTTTCTGTGTGTAT
AAATTTAGCTGCTATTAACAGAAGAGAGAACTTTCTGTGAGTAGCCATGTGTGTTGATCA
GATACAATTTTTCTGAGATCTTCAATTAATCTCACTTTAAAAATGACCAAAACATGTCTT
TCTTGAATTAACTTTGAATAAAAGTTTGTATATTAT
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
GGAGGTCTGCTCTACGCTGTAGGGGGTTATGATGGAGCTTCACGCCAGTGTCTCAGCACA
GTAGAATGCTACAATGCTACAGCGAATGAGTGGACCTATATAGCGGAAATGAGCACCAGG
CGAAGTGGAGCAGGTGTTGGTGTGTTAAACAACTTATTGTATGCTGTAGGAGGTCATGAT
GGCCCTTTAGTACGAAAAAGTGTTGAAGTGTATGATCCTGCCAGCAACACTTGGAGACAG
GTTGCAGATATGAACATGTGCAGAAGAAATGCAGGTGTTTGTGCAGTTAACGGTCTGTTA
TACGTAGTTGGAGGGGATGATGGTTCCTGTAATTTGGCATCAGTAGAATATTATAATCCA
ACAACTGATAAATGGACAGTCGTGTCATCTTGTATGAGCACAGGAAGAAGTTATGCAGGG
GTCACAGTTATTGATAAACCATTATGAGCCTAAAGGACATTTTCGGCACATTTCCACATG
AGAAGCAGGCTTCAACAAGTACTTCTGAAGTTGCCGAGAGTCTAGCACTTCTCCACTTGT
AGCTGCACTTTAAGTCTCAGCAGAAGATAAGATCATCTGCCTTTATAGGCCTCACATACT
GAAGATTATTTTTGGTAGATGCACCGTGTAGGCTTTTTCTGCAACGAGCAGCAGCTGACT
GAATTTTAATAAGAAACTTGGACTGCAGTATTATTCTGTGGTTTCTGGACAACAGTTGCT
TCCATAAAGACTAGTTACCAACCTTGAGTGACCATGGGTTATTTTGTGAAGGGAGATAAA
GTAATATGTGTTCTTGTAAAATTAAATTTCATCTTTATTCCTTCTCTTGAAAATCTGTAT
ACACAGGAACTGAAAATCTTTGAACAGGCATTAAAATCTATGTAAGTATACAAACTAGTC
GAGGGATAAAACTGCTTTTATAAAATATGTTTGATTACATGAGTATAATAAATTGTGTGC
ATATAAATGTGTGTCTATATGCTTTCCTTTAAATATGTTTGAAAAGATGTTTGAAACTTG
ATTATACTATTTATAATTGGCACAGTACTTTGAATTATGCCAGTACTACATTGTAAAACA
GAGTTGTATTTTTTGATATTTAACATTGCTTAACACTTTAAAATGCCACTTCTGAGGAAT
GAACATGGTGTAACACACTTGAATAAATGTGTGATGCCAAACTTTTTTAAATAAAGTATA
AATTATGCTTATTTATTATTTTCCTTGGTTTAATCTTGGTCATGTTTTGGTGTGTATTTC
TAATTTTTTTTCTTAAAGTAACACTTTGGCATGAACATTACTGCAGGTTTTTGATGAATT
TAATGAATGTATGGAATTCAACTGAATTTGCATGGTCTTAAGAATTTTTTCTGTGTGTAT
AAATTTAGCTGCTATTAACAGAAGAGAGAACTTTCTGTGAGTAGCCATGTGTGTTGATCA
GATACAATTTTTCTGAGATCTTCAATTAATCTCACTTTAAAAATGACCAAAACATGTCTT
TCTTGAATTAACTTTGAATAAAAGTTTGTATATTAT
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
132-276, gnl|bosTau2|chr17 (2024249-2024105) |
|
132-276, gnl|canFam2|chr15 (64300329-64300504) |
|
132-276, gnl|danRer3|chr14 (23885238-23885382) |
|
132-276, gnl|dasNov1|scaffold_3179 (46464-46637) |
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132-276, gnl|echTel1|scaffold_258271 (3245-3073) |
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132-276, gnl|fr1|chrUn (18870805-18870961) |
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132-276, gnl|galGal2|chr4 (24422540-24422717) |
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132-276, gnl|hg17|chr4 (166592771-166592943) |
|
132-276, gnl|Hg17|chr4 (166592781-166592925) |
|
132-276, gnl|loxAfr1|scaffold_26165 (9262-9130) |
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132-276, gnl|mm7|chr8 (63169215-63169042) |
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132-276, gnl|Mm7|chr8 (63169203-63169059) |
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132-276, gnl|monDom2|scaffold_9 (39914332-39914508) |
|
132-276, gnl|oryCun1|scaffold_208844 (8678-8505) |
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132-276, gnl|panTro1|chr3 (184030562-184030734) |
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132-276, gnl|rheMac2|chr5 (157490208-157490380) |
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132-276, gnl|rn3|chr16 (26682448-26682621) |
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132-276, gnl|tetNig1|chr18 (7623902-7624057) |
|
132-276, gnl|xenTro1|scaffold_478 (266259-266088) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
132-276, gnl|bosTau2|chr17 (2024249-2024105) |
|
132-276, gnl|canFam2|chr15 (64300329-64300504) |
|
132-276, gnl|danRer3|chr14 (23885238-23885382) |
|
132-276, gnl|dasNov1|scaffold_3179 (46464-46637) |
|
132-276, gnl|echTel1|scaffold_258271 (3245-3073) |
|
132-276, gnl|fr1|chrUn (18870805-18870961) |
|
132-276, gnl|galGal2|chr4 (24422540-24422717) |
|
132-276, gnl|hg17|chr4 (166592771-166592943) |
|
132-276, gnl|Hg17|chr4 (166592781-166592925) |
|
132-276, gnl|loxAfr1|scaffold_26165 (9262-9130) |
|
132-276, gnl|mm7|chr8 (63169215-63169042) |
|
132-276, gnl|Mm7|chr8 (63169203-63169059) |
|
132-276, gnl|monDom2|scaffold_9 (39914332-39914508) |
|
132-276, gnl|oryCun1|scaffold_208844 (8678-8505) |
|
132-276, gnl|panTro1|chr3 (184030562-184030734) |
|
132-276, gnl|rheMac2|chr5 (157490208-157490380) |
|
132-276, gnl|rn3|chr16 (26682448-26682621) |
|
132-276, gnl|tetNig1|chr18 (7623902-7624057) |
|
132-276, gnl|xenTro1|scaffold_478 (266259-266088) |
|
fco (2.0437) |
|
fcc (0.593354) |
|
cte (0.58548) |
|
tra (0.369276) |
|
nco (0.323468) |
|
ret (0.257467) |
|
cbl (0.229595) |
|
nms (0.213858) |
|
mas (0.210305) |
|
liv (0.146284) |
|
lin (0.145603) |
|
csk (0.140746) |
|
kid (0.129735) |
|
ova (0.129132) |
|
cbr (0.127975) |
|
thg (0.126791) |
|
bla (0.124347) |
|
ecc (0.115035) |
|
jca (0.11396) |
|
cty (0.10408) |
|
fco (2.0437) |
|
fcc (0.593354) |
|
cte (0.58548) |
|
tra (0.369276) |
|
nco (0.323468) |
|
ret (0.257467) |
|
cbl (0.229595) |
|
nms (0.213858) |
|
mas (0.210305) |
|
liv (0.146284) |
|
lin (0.145603) |
|
csk (0.140746) |
|
kid (0.129735) |
|
ova (0.129132) |
|
cbr (0.127975) |
|
thg (0.126791) |
|
bla (0.124347) |
|
ecc (0.115035) |
|
jca (0.11396) |
|
cty (0.10408) |
