Non-Coding RNA Search

Ss1.1-rlin32_l19.5

Sequence:


               
               TTACCATGGATAACATTTTTGAAAAACTTTGTATTTATACTCTTTTCGCTCAGTGGAGTT
CACCGTGGTCATATTCTTTCCAGGGGAAATCCTAAAGCTGTTGGATTCTCCAGTAAAAAA
GGATCTTTCAAACTCAGTCTCTCCTGAAGGAGAGGATCAGCATTATCTGTGTTCTCCTTT
TTCCGTTGTGTTGCTCTTATAAAGAGGTTGTCCTGTCCACATCCTGCCCCAGGAGACAAA
CTATTCCTTCCATGCTCCTTTGAGTCATCAGAGGAAGAATCAAACATGTACATTTGTACA
GAATGGTGAGTGTATGTGTGTAGGTTTAGAGAGTCCTATGTAAATATTCCTTTGGTGAAA
CAACTTTATCAAAATCATCCATCAGTTTTCTCTGTAGAAATCGGCAAATGCCATGAGTCA
GGGCTTTGTACTCCTTTCCAGAAAGCCAGTGTAATAGCATACCTCTAGACATTTTGTTGT
CAGTTTACAAACAAGAGCCGTCTTGATTTTGAACAAGATTATGTAACTATCAAACTGTTC
AAAAATATCTGTATAATTCTCTTGGGAATGCAAGGCATGACTAAGTTTGTTAGTATGGTG
TATTCGTTGTTGATAAAATTAATATTAGTGTAAATTGTTGGGAGAAAGGATTTTCTTTAT
AAGAAATAGAGCTATATGATGAGGTGGTGTCTGGATTATACTTCTATAGGAGAGATCGTG
AATATGGAAATATTTGTCTTAAGTGCTTTGTCAGGGAGACAGAGCAGAAATAATCGCATA
TTAAAATGACTAGATTTTGCAAAGCAAGACTGACTTATGAACATCTTTAGACATGGACTA
AACCACACCATGGGTAGTAACAAATACAGTCTAAGCATAAAAGATTTACCATCCTTGAAC
AGAACAAAGGTCTAATAAAAATAAAATCCAGTAATATTTATTGAACTGTGCACAGAGCCT
TAAGGCACATATTTGGTGAGGGAAGTAGCAGTGTATAGATATAGATTCTGAAGCCCTTAA
ATATCTCCTAACACATTAAGATCCATTCATATTGAACCGAGTTATCAGGTGACTCTGGGG
AAGTTTTAAAAAAAAAAGGAACTTCACACATCGGTATACCTTCAACACAGTACCAGTTTA
CCTTTGATGTGATGTCAGCGTTTTGCAAAATAACCATACCATGTAATTTATCATTGAATA
AAATGTCTTTGAAGCTGTGTGAAAATACAACAATTTTTCTAAAGAAATAAATTCATGTTT
GTAAATAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTACCATGGATAACATTTTTGAAAAACTTTGTATTTATACTCTTTTCGCTCAGTGGAGTT
CACCGTGGTCATATTCTTTCCAGGGGAAATCCTAAAGCTGTTGGATTCTCCAGTAAAAAA
GGATCTTTCAAACTCAGTCTCTCCTGAAGGAGAGGATCAGCATTATCTGTGTTCTCCTTT
TTCCGTTGTGTTGCTCTTATAAAGAGGTTGTCCTGTCCACATCCTGCCCCAGGAGACAAA
CTATTCCTTCCATGCTCCTTTGAGTCATCAGAGGAAGAATCAAACATGTACATTTGTACA
GAATGGTGAGTGTATGTGTGTAGGTTTAGAGAGTCCTATGTAAATATTCCTTTGGTGAAA
CAACTTTATCAAAATCATCCATCAGTTTTCTCTGTAGAAATCGGCAAATGCCATGAGTCA
GGGCTTTGTACTCCTTTCCAGAAAGCCAGTGTAATAGCATACCTCTAGACATTTTGTTGT
CAGTTTACAAACAAGAGCCGTCTTGATTTTGAACAAGATTATGTAACTATCAAACTGTTC
AAAAATATCTGTATAATTCTCTTGGGAATGCAAGGCATGACTAAGTTTGTTAGTATGGTG
TATTCGTTGTTGATAAAATTAATATTAGTGTAAATTGTTGGGAGAAAGGATTTTCTTTAT
AAGAAATAGAGCTATATGATGAGGTGGTGTCTGGATTATACTTCTATAGGAGAGATCGTG
AATATGGAAATATTTGTCTTAAGTGCTTTGTCAGGGAGACAGAGCAGAAATAATCGCATA
TTAAAATGACTAGATTTTGCAAAGCAAGACTGACTTATGAACATCTTTAGACATGGACTA
AACCACACCATGGGTAGTAACAAATACAGTCTAAGCATAAAAGATTTACCATCCTTGAAC
AGAACAAAGGTCTAATAAAAATAAAATCCAGTAATATTTATTGAACTGTGCACAGAGCCT
TAAGGCACATATTTGGTGAGGGAAGTAGCAGTGTATAGATATAGATTCTGAAGCCCTTAA
ATATCTCCTAACACATTAAGATCCATTCATATTGAACCGAGTTATCAGGTGACTCTGGGG
AAGTTTTAAAAAAAAAAGGAACTTCACACATCGGTATACCTTCAACACAGTACCAGTTTA
CCTTTGATGTGATGTCAGCGTTTTGCAAAATAACCATACCATGTAATTTATCATTGAATA
AAATGTCTTTGAAGCTGTGTGAAAATACAACAATTTTTCTAAAGAAATAAATTCATGTTT
GTAAATAAAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               64-163, - strand, RNAz p=0.974178

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               64-163, - strand, RNAz p=0.974178

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-1265, gnl|bosTau2|chr26 (35709625-35708400)
               

               
               1-1265, gnl|Hg17|chr10 (90572555-90571087)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1265, gnl|bosTau2|chr26 (35709625-35708400)
               

               
               1-1265, gnl|Hg17|chr10 (90572555-90571087)

Expressed library(ies): 10 entry(ies)

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Expressed library(ies): 10 entry(ies)

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               rec (0.692281)
               

               
               lin (0.582411)
               

               
               ret (0.3862)
               

               
               clu (0.358938)
               

               
               mga (0.160205)
               

               
               ski (0.146735)
               

               
               spl (0.143184)
               

               
               lyg (0.133103)
               

               
               tra (0.123092)
               

               
               cbl (0.114797)

Expressed library(ies): 10 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               rec (0.692281)
               

               
               lin (0.582411)
               

               
               ret (0.3862)
               

               
               clu (0.358938)
               

               
               mga (0.160205)
               

               
               ski (0.146735)
               

               
               spl (0.143184)
               

               
               lyg (0.133103)
               

               
               tra (0.123092)
               

               
               cbl (0.114797)

	1-1265, gnl\|bosTau2\|chr26 (35709625-35708400)
	1-1265, gnl\|Hg17\|chr10 (90572555-90571087)

	rec (0.692281)
	lin (0.582411)
	ret (0.3862)
	clu (0.358938)
	mga (0.160205)
	ski (0.146735)
	spl (0.143184)
	lyg (0.133103)
	tra (0.123092)
	cbl (0.114797)