Non-Coding RNA Search

Ss1.1-rlin32_l4.5

Sequence:


               
               CTCTAAATCAAGAATTCAGGACATGCTTAATTTTTAAGGAGGCTTTTATCTAGAAGAATC
AGGATCTTCCACCACTGATCAGGAATCCTTTGTAAAAAATGAAGACTTTTGATTCATCTT
TGTGGTAGATGAACAGGCATAATTATAAGATGGGACTGGTCCGAGATCGGTGGGCTCCTT
CCAGCATGGAGATAAGGGAATTGCATAATCGTGATGTGATAAACCGTGGTGCTTTTAAGT
CGCGGCAGAAGAGAACGCAGACATTAATCACAAGCAAATGTGGAGAAAACCCATCTCCAT
TTTTCCTTGCCCGATCCATCGCTATAGCTATGGGGATCCGTTTCATTGTAATGGTAATGA
TATACAGTGGCATGATCATAAATTTGTTATTCAACCAAGAGGCTCCAAGTCCTTTGAAAG
AAAGTTACTGTGGTCCATGTCCTAAAAACTGGATATGCTATCGAAATAGCTGCTACCAGT
TTTCTAATGAGAGCAAGACCTGGCTCCAGAGCCAAGCTTCTTGTAGATCTCAAAATTCCA
GTCTTCTGAAGATATACAGCAGAGAAGACCAGGATTTCTTCAAATTGGTGAAGTCATATC
ATTGGATGGGATTAGTACAAATTCCAACAAACAGATCCTGGCAGTGGGAAGATGGTTCCA
TCCTCTCACCTAACCAAATAACAATGGTTGAAATGCAGAATGGAAGCTGTGCAGTCTATG
GCTCAAGTTTTAAAGGTTATACGGAAAACTGCTTAACTCTGAACACATACATCTGCATGC
AGAGGATTGTCTAAAAGCTTGTAATTTATAAACTGGAAAGGATTTAAAGACACAAAAGCC
ATTTTCTGAGTGTTCACCTTGAAAACTTCCAGAAGAAAATTCCAGCCATAGTAATTGAAT
TATTTTTTCATGTAAAATATGTATTTTTAAAAAATCCTTGCAGAGAATAAAGATGAACAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCTAAATCAAGAATTCAGGACATGCTTAATTTTTAAGGAGGCTTTTATCTAGAAGAATC
AGGATCTTCCACCACTGATCAGGAATCCTTTGTAAAAAATGAAGACTTTTGATTCATCTT
TGTGGTAGATGAACAGGCATAATTATAAGATGGGACTGGTCCGAGATCGGTGGGCTCCTT
CCAGCATGGAGATAAGGGAATTGCATAATCGTGATGTGATAAACCGTGGTGCTTTTAAGT
CGCGGCAGAAGAGAACGCAGACATTAATCACAAGCAAATGTGGAGAAAACCCATCTCCAT
TTTTCCTTGCCCGATCCATCGCTATAGCTATGGGGATCCGTTTCATTGTAATGGTAATGA
TATACAGTGGCATGATCATAAATTTGTTATTCAACCAAGAGGCTCCAAGTCCTTTGAAAG
AAAGTTACTGTGGTCCATGTCCTAAAAACTGGATATGCTATCGAAATAGCTGCTACCAGT
TTTCTAATGAGAGCAAGACCTGGCTCCAGAGCCAAGCTTCTTGTAGATCTCAAAATTCCA
GTCTTCTGAAGATATACAGCAGAGAAGACCAGGATTTCTTCAAATTGGTGAAGTCATATC
ATTGGATGGGATTAGTACAAATTCCAACAAACAGATCCTGGCAGTGGGAAGATGGTTCCA
TCCTCTCACCTAACCAAATAACAATGGTTGAAATGCAGAATGGAAGCTGTGCAGTCTATG
GCTCAAGTTTTAAAGGTTATACGGAAAACTGCTTAACTCTGAACACATACATCTGCATGC
AGAGGATTGTCTAAAAGCTTGTAATTTATAAACTGGAAAGGATTTAAAGACACAAAAGCC
ATTTTCTGAGTGTTCACCTTGAAAACTTCCAGAAGAAAATTCCAGCCATAGTAATTGAAT
TATTTTTTCATGTAAAATATGTATTTTTAAAAAATCCTTGCAGAGAATAAAGATGAACAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|11093809|gb|AAG29426.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|11093809|gb|AAG29426.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               419-573, - strand, RNAz p=0.842865

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               419-573, - strand, RNAz p=0.842865

Aligned organism(s): 15 entry(ies)

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Aligned organism(s): 15 entry(ies)

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               212-384, gnl|bosTau2|chr5 (58226042-58226214)
               


               
               419-573, gnl|bosTau2|chr5 (58227043-58227197)
               

               
               419-573, gnl|Hg17|chr12 (10422573-10422419)
               

               
               419-573, gnl|Mm7|chr6 (129638774-129638620)
               


               
               657-850, gnl|bosTau2|chr5 (58229100-58229295)
               

               
               657-850, gnl|canFam2|chr27 (38677501-38677325)
               

               
               657-850, gnl|dasNov1|scaffold_67590 (515-690)
               

               
               657-850, gnl|echTel1|scaffold_274016 (629-452)
               

               
               657-850, gnl|hg17|chr12 (10416979-10417156)
               

               
               657-850, gnl|loxAfr1|scaffold_218076 (377-554)
               

               
               657-850, gnl|mm7|chr6 (129636097-129636249)
               

               
               657-850, gnl|monDom2|scaffold_31 (20550988-20550823)
               

               
               657-850, gnl|panTro1|chrUn_random (36683667-36683844)
               

               
               657-850, gnl|rheMac2|chr11 (10529022-10529199)
               

               
               657-850, gnl|rn3|chr4 (167160138-167160313)

Aligned organism(s): 15 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               212-384, gnl|bosTau2|chr5 (58226042-58226214)
               


               
               419-573, gnl|bosTau2|chr5 (58227043-58227197)
               

               
               419-573, gnl|Hg17|chr12 (10422573-10422419)
               

               
               419-573, gnl|Mm7|chr6 (129638774-129638620)
               


               
               657-850, gnl|bosTau2|chr5 (58229100-58229295)
               

               
               657-850, gnl|canFam2|chr27 (38677501-38677325)
               

               
               657-850, gnl|dasNov1|scaffold_67590 (515-690)
               

               
               657-850, gnl|echTel1|scaffold_274016 (629-452)
               

               
               657-850, gnl|hg17|chr12 (10416979-10417156)
               

               
               657-850, gnl|loxAfr1|scaffold_218076 (377-554)
               

               
               657-850, gnl|mm7|chr6 (129636097-129636249)
               

               
               657-850, gnl|monDom2|scaffold_31 (20550988-20550823)
               

               
               657-850, gnl|panTro1|chrUn_random (36683667-36683844)
               

               
               657-850, gnl|rheMac2|chr11 (10529022-10529199)
               

               
               657-850, gnl|rn3|chr4 (167160138-167160313)

Expressed library(ies): 8 entry(ies)

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Expressed library(ies): 8 entry(ies)

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               lin (0.582411)
               

               
               spl (0.572738)
               

               
               rec (0.17307)
               

               
               mga (0.160205)
               

               
               bfe (0.149858)
               

               
               liv (0.146284)
               

               
               ret (0.128733)
               

               
               thg (0.126791)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lin (0.582411)
               

               
               spl (0.572738)
               

               
               rec (0.17307)
               

               
               mga (0.160205)
               

               
               bfe (0.149858)
               

               
               liv (0.146284)
               

               
               ret (0.128733)
               

               
               thg (0.126791)

	212-384, gnl\|bosTau2\|chr5 (58226042-58226214)

	419-573, gnl\|bosTau2\|chr5 (58227043-58227197)
	419-573, gnl\|Hg17\|chr12 (10422573-10422419)
	419-573, gnl\|Mm7\|chr6 (129638774-129638620)

	657-850, gnl\|bosTau2\|chr5 (58229100-58229295)
	657-850, gnl\|canFam2\|chr27 (38677501-38677325)
	657-850, gnl\|dasNov1\|scaffold_67590 (515-690)
	657-850, gnl\|echTel1\|scaffold_274016 (629-452)
	657-850, gnl\|hg17\|chr12 (10416979-10417156)
	657-850, gnl\|loxAfr1\|scaffold_218076 (377-554)
	657-850, gnl\|mm7\|chr6 (129636097-129636249)
	657-850, gnl\|monDom2\|scaffold_31 (20550988-20550823)
	657-850, gnl\|panTro1\|chrUn_random (36683667-36683844)
	657-850, gnl\|rheMac2\|chr11 (10529022-10529199)
	657-850, gnl\|rn3\|chr4 (167160138-167160313)

	lin (0.582411)
	spl (0.572738)
	rec (0.17307)
	mga (0.160205)
	bfe (0.149858)
	liv (0.146284)
	ret (0.128733)
	thg (0.126791)