Non-Coding RNA Search

Ss1.1-rlin32_o23.5

Sequence:


               
               CCAAAAGACAGCATGACTGCACAACAGCATATTTCTTAGCCTTTCCTTTGTCTTGATCTG
TTGTTAACAAGAATAAAACTGCCAGACTTAAAATATTCTACTATTGTGCTGGAAGATATA
CAATTTAGACTGCACAAAACTTTTCCTTTAAAGAAACATAACTCAGCTGTCTTTTAAGAG
CTGTGTTGTTATCTACAAGACTCTTTGCAGTCTTTTTTCAGAGCAAATTTTAACAGCTAG
TTGCGAATGGTTTAAAAAATAAAAAATTACTGAAATATTAATTTGGGGGGTTTTATAGAG
GGAGAAAAACAAAACAGGACCAAAGTTTATGTGCCTTCTTCAGTAGTCTTAATTGATCTT
TTCTTCCTATTTGAGACTAAGGTAGTATCAGTATTCTGGTTTTCAGGAAATACATACTGT
ATAGTTTTAAAAGAATGTTATCCCACAAACCATCCATTCAAGCAAACACCTGTAACTGTA
AAGTGAGGTCTCGGTTGCACTTTTTGCCTTTATCACATAATACTCATTTTATTGCATTGT
GCAGATCCAAGAACAGAGCTGCTCTAATCTTCGTGGTAGTCATCTTAGTTTCTGTAACCT
GAGGCATATGTTCCAGAGAACAGGGATATTTATCTGGTCCAGTGACCTTGGTGATAATAG
TCATGATTGAAAGCTGCTTATGGCCAGCTTGAATCAGCACTGTAAACAGATTTTTGTTGT
TGTTATGTTATTTTTAGTTCTTGATTCTATGTAGTAGTTGTAATAATAAATATTTAAATA
GCTATTTTTGATGTCATTTTAAAAAATCATGCTCCGGCCTTTTTTCCCCCTTCCATTGTT
ACCCAGATCTTTAAATAATTCATCCCATATCCAAAACGTACTAATTATAAAGATTGCAGA
CTAAGCAAAGTTTTGCATCAAAGTGTCACCTCATTGCTCTGACCAAAGACTGACTGTTCT
GGTTTTAACTCCTTTCTGTTAAGCATTTTTTCCCAAGCTCCTTTCTGAAAGAAGATCCAA
TGCAAAGCGGCCTTTCCTTTGTATTTTCTATTGGTGAATAGACTACTTTAAGAGAGTGGG
AGTTTAATATGAACAGAATGGATTAGGATGACAAAGGTTTGATGGGCATTTTCAGTACTG
TATTTAAGAAAAAAAATAGCACAGCCAGGCGCCTCTGACATTGTCTCGTGTTTTACGTGG
TCTGTTCATAAAATTCCCTTTTTTCAGTTTATAAAAGTGTTCACCTAACAGAAGAAAATG
CTGTAAATATTTGTAACAACGTTTTTTTAAACCAGGCCAAAAAAGAAAATGATAAAAAAA
AACAACGGTTTTTGGGAACAAGTAACATATAAAGTGGTTTTATATAAAACATCAATTGTC
TTGTATATTTTGATAAGCAGCAGTACCAGCTTTCATTTGTAACACAGTTTGTGTCATTGG
AAGAAAAGGATTCTGTGATTTGTTGAAGTGAATTATGTTATAAATGCAAAGAGAAGATAA
AATATTAAAAACATATTTTCTAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCAAAAGACAGCATGACTGCACAACAGCATATTTCTTAGCCTTTCCTTTGTCTTGATCTG
TTGTTAACAAGAATAAAACTGCCAGACTTAAAATATTCTACTATTGTGCTGGAAGATATA
CAATTTAGACTGCACAAAACTTTTCCTTTAAAGAAACATAACTCAGCTGTCTTTTAAGAG
CTGTGTTGTTATCTACAAGACTCTTTGCAGTCTTTTTTCAGAGCAAATTTTAACAGCTAG
TTGCGAATGGTTTAAAAAATAAAAAATTACTGAAATATTAATTTGGGGGGTTTTATAGAG
GGAGAAAAACAAAACAGGACCAAAGTTTATGTGCCTTCTTCAGTAGTCTTAATTGATCTT
TTCTTCCTATTTGAGACTAAGGTAGTATCAGTATTCTGGTTTTCAGGAAATACATACTGT
ATAGTTTTAAAAGAATGTTATCCCACAAACCATCCATTCAAGCAAACACCTGTAACTGTA
AAGTGAGGTCTCGGTTGCACTTTTTGCCTTTATCACATAATACTCATTTTATTGCATTGT
GCAGATCCAAGAACAGAGCTGCTCTAATCTTCGTGGTAGTCATCTTAGTTTCTGTAACCT
GAGGCATATGTTCCAGAGAACAGGGATATTTATCTGGTCCAGTGACCTTGGTGATAATAG
TCATGATTGAAAGCTGCTTATGGCCAGCTTGAATCAGCACTGTAAACAGATTTTTGTTGT
TGTTATGTTATTTTTAGTTCTTGATTCTATGTAGTAGTTGTAATAATAAATATTTAAATA
GCTATTTTTGATGTCATTTTAAAAAATCATGCTCCGGCCTTTTTTCCCCCTTCCATTGTT
ACCCAGATCTTTAAATAATTCATCCCATATCCAAAACGTACTAATTATAAAGATTGCAGA
CTAAGCAAAGTTTTGCATCAAAGTGTCACCTCATTGCTCTGACCAAAGACTGACTGTTCT
GGTTTTAACTCCTTTCTGTTAAGCATTTTTTCCCAAGCTCCTTTCTGAAAGAAGATCCAA
TGCAAAGCGGCCTTTCCTTTGTATTTTCTATTGGTGAATAGACTACTTTAAGAGAGTGGG
AGTTTAATATGAACAGAATGGATTAGGATGACAAAGGTTTGATGGGCATTTTCAGTACTG
TATTTAAGAAAAAAAATAGCACAGCCAGGCGCCTCTGACATTGTCTCGTGTTTTACGTGG
TCTGTTCATAAAATTCCCTTTTTTCAGTTTATAAAAGTGTTCACCTAACAGAAGAAAATG
CTGTAAATATTTGTAACAACGTTTTTTTAAACCAGGCCAAAAAAGAAAATGATAAAAAAA
AACAACGGTTTTTGGGAACAAGTAACATATAAAGTGGTTTTATATAAAACATCAATTGTC
TTGTATATTTTGATAAGCAGCAGTACCAGCTTTCATTTGTAACACAGTTTGTGTCATTGG
AAGAAAAGGATTCTGTGATTTGTTGAAGTGAATTATGTTATAAATGCAAAGAGAAGATAA
AATATTAAAAACATATTTTCTAAAAAAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               1177-1366, gnl|bosTau2|chr10 (46844633-46844455)
               

               
               1177-1366, gnl|Hg17|chr9 (112060772-112060596)
               

               
               1177-1366, gnl|Mm7|chr4 (59513758-59513581)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1177-1366, gnl|bosTau2|chr10 (46844633-46844455)
               

               
               1177-1366, gnl|Hg17|chr9 (112060772-112060596)
               

               
               1177-1366, gnl|Mm7|chr4 (59513758-59513581)

Expressed library(ies): 22 entry(ies)

More info

Expressed library(ies): 22 entry(ies)

Help | Less info


               
               lin (0.582411)
               

               
               pro (0.512033)
               

               
               col (0.390016)
               

               
               ret (0.3862)
               

               
               tra (0.369276)
               

               
               rec (0.346141)
               

               
               cbl (0.344392)
               

               
               vin (0.332557)
               

               
               spl (0.286369)
               

               
               lnt (0.284616)
               

               
               aor (0.195274)
               

               
               mgm (0.180343)
               

               
               nco (0.161734)
               

               
               csp (0.161186)
               

               
               mga (0.160205)
               

               
               lyg (0.133103)
               

               
               kid (0.129735)
               

               
               ova (0.129132)
               

               
               thg (0.126791)
               

               
               eru (0.120048)
               

               
               eje (0.0988338)
               

               
               ldo (0.0970026)

Expressed library(ies): 22 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lin (0.582411)
               

               
               pro (0.512033)
               

               
               col (0.390016)
               

               
               ret (0.3862)
               

               
               tra (0.369276)
               

               
               rec (0.346141)
               

               
               cbl (0.344392)
               

               
               vin (0.332557)
               

               
               spl (0.286369)
               

               
               lnt (0.284616)
               

               
               aor (0.195274)
               

               
               mgm (0.180343)
               

               
               nco (0.161734)
               

               
               csp (0.161186)
               

               
               mga (0.160205)
               

               
               lyg (0.133103)
               

               
               kid (0.129735)
               

               
               ova (0.129132)
               

               
               thg (0.126791)
               

               
               eru (0.120048)
               

               
               eje (0.0988338)
               

               
               ldo (0.0970026)

	1177-1366, gnl\|bosTau2\|chr10 (46844633-46844455)
	1177-1366, gnl\|Hg17\|chr9 (112060772-112060596)
	1177-1366, gnl\|Mm7\|chr4 (59513758-59513581)

	lin (0.582411)
	pro (0.512033)
	col (0.390016)
	ret (0.3862)
	tra (0.369276)
	rec (0.346141)
	cbl (0.344392)
	vin (0.332557)
	spl (0.286369)
	lnt (0.284616)
	aor (0.195274)
	mgm (0.180343)
	nco (0.161734)
	csp (0.161186)
	mga (0.160205)
	lyg (0.133103)
	kid (0.129735)
	ova (0.129132)
	thg (0.126791)
	eru (0.120048)
	eje (0.0988338)
	ldo (0.0970026)