Ss1.1-rlin33_l16.5
|
AGAGCAACGCGCGCACCAACCCGGCGCCGCCTCGGGAGCCGTAGGTAGAGGGGAGGCTGC
GCTGCCGGCCGGGGTGTGTAGCCCGCCCGGCTCTTGGGACGCTGAGCGCGCCTTCGGCCT
TCGGCAGGGAGGCCGCGGGCGCTCCCGAGATGGGGCAGGAAGCCCGCGCGTCTGGGGATC
CGTAGCTCCCGGCCCGATCCCGCCGGTTCCCGCAGCTTTGGGGCCCGCGGGAAGGACCTT
TGAGGGAGCAGGGAGCTGGGCTCGGACGAGATGGCCCTGGTGCCCTATGAGGAGACCGCA
GGAATGGGGCTGCAGAGATTCCACAAGCCTCTTGCCACCTTCTCCTTTGCAAACCACAGG
ATCCAGATCCAGCAGGACTGGAAGCAGCTGGGAGTCGCTGCCGTGGTTTGGGACGCGGCT
GTCGTTCTTTCCACGTATCTGGAGATGGGAGCTGTGGAGCTCAGGGGCTGTTCTGCCGTG
GAGCTGGGTGCTGGCACAGGGCTGGTGGGCATAGTGGCTGCCCTGCTGGGTGCTCATGTG
ACTATCACGGATCGAAAAGTAGCATTAGAGTTTCTTAAGTCAAACGTGCAAGCCAACTTA
CCGCCCCATATCCAACCCAAAGCTGTTGTTAAGGAGCTGACTTGGGGACAGAATTTGGGG
AGTTTTTCACCTGGAGAATTTGACCTGATACTTGGAGCTGATATCATATATTTAGAAGAA
ACATTTACAGATCTTCTTCGAACATTGGAACATCTCTGTAGCAACCACTCTGTGATTCTT
TTAGCTTGCCGAATTCGCTATGAACGGGATCACAACTTCTTAGCGATGCTGGAGAGGCAA
TTTACTGTGAGTAAGGTTCACTATGATCCTGAAAAAGATGTTCATATTTACAAAGCACAG
AAGAGAAACCTGAGGGAGGACTTATAGTTGGCTATGATTTATGTTGTCAATTAAGGTCTC
AGACTGGGAATATAAACACATGTAATGAAATGGCTTACTGTAGAAAAAAGGCAAAGCAAA
ATGTGCAGTGTTTTGTCCCATATTTGTGACTTTTTAGTTATATTTTGATAACTCTGAAAT
TCAAGTGCCATTAAAGGAAAGTTCGAGATTTTGGTT
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
AGAGCAACGCGCGCACCAACCCGGCGCCGCCTCGGGAGCCGTAGGTAGAGGGGAGGCTGC
GCTGCCGGCCGGGGTGTGTAGCCCGCCCGGCTCTTGGGACGCTGAGCGCGCCTTCGGCCT
TCGGCAGGGAGGCCGCGGGCGCTCCCGAGATGGGGCAGGAAGCCCGCGCGTCTGGGGATC
CGTAGCTCCCGGCCCGATCCCGCCGGTTCCCGCAGCTTTGGGGCCCGCGGGAAGGACCTT
TGAGGGAGCAGGGAGCTGGGCTCGGACGAGATGGCCCTGGTGCCCTATGAGGAGACCGCA
GGAATGGGGCTGCAGAGATTCCACAAGCCTCTTGCCACCTTCTCCTTTGCAAACCACAGG
ATCCAGATCCAGCAGGACTGGAAGCAGCTGGGAGTCGCTGCCGTGGTTTGGGACGCGGCT
GTCGTTCTTTCCACGTATCTGGAGATGGGAGCTGTGGAGCTCAGGGGCTGTTCTGCCGTG
GAGCTGGGTGCTGGCACAGGGCTGGTGGGCATAGTGGCTGCCCTGCTGGGTGCTCATGTG
ACTATCACGGATCGAAAAGTAGCATTAGAGTTTCTTAAGTCAAACGTGCAAGCCAACTTA
CCGCCCCATATCCAACCCAAAGCTGTTGTTAAGGAGCTGACTTGGGGACAGAATTTGGGG
AGTTTTTCACCTGGAGAATTTGACCTGATACTTGGAGCTGATATCATATATTTAGAAGAA
ACATTTACAGATCTTCTTCGAACATTGGAACATCTCTGTAGCAACCACTCTGTGATTCTT
TTAGCTTGCCGAATTCGCTATGAACGGGATCACAACTTCTTAGCGATGCTGGAGAGGCAA
TTTACTGTGAGTAAGGTTCACTATGATCCTGAAAAAGATGTTCATATTTACAAAGCACAG
AAGAGAAACCTGAGGGAGGACTTATAGTTGGCTATGATTTATGTTGTCAATTAAGGTCTC
AGACTGGGAATATAAACACATGTAATGAAATGGCTTACTGTAGAAAAAAGGCAAAGCAAA
ATGTGCAGTGTTTTGTCCCATATTTGTGACTTTTTAGTTATATTTTGATAACTCTGAAAT
TCAAGTGCCATTAAAGGAAAGTTCGAGATTTTGGTT
|
|
gi|55615428|ref|XP_516052.1| |
Protein identifier
|
gi|55615428|ref|XP_516052.1| |
|
3-237, gnl|bosTau2|chr2 (62266909-62267138) |
|
3-237, gnl|dasNov1|scaffold_40260 (7351-6912) |
|
3-237, gnl|Hg17|chr2 (208315533-208315319) |
|
3-237, gnl|hg17|chr21 (39529850-39530311) |
|
3-237, gnl|loxAfr1|scaffold_1397 (35105-35496) |
|
3-237, gnl|panTro1|chr22 (39565948-39566409) |
|
3-237, gnl|rheMac2|chr3 (7407359-7406904) |
| |
|
238-418, gnl|bosTau2|chr2 (62267797-62267976) |
|
238-418, gnl|Hg17|chr2 (208314634-208314458) |
|
238-418, gnl|Mm7|chr1 (64858170-64858000) |
| |
|
526-942, gnl|bosTau2|chr2 (62275130-62275546) |
|
526-942, gnl|Hg17|chr2 (208303677-208303261) |
|
526-942, gnl|Mm7|chr1 (64849869-64849453) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
3-237, gnl|bosTau2|chr2 (62266909-62267138) |
|
3-237, gnl|dasNov1|scaffold_40260 (7351-6912) |
|
3-237, gnl|Hg17|chr2 (208315533-208315319) |
|
3-237, gnl|hg17|chr21 (39529850-39530311) |
|
3-237, gnl|loxAfr1|scaffold_1397 (35105-35496) |
|
3-237, gnl|panTro1|chr22 (39565948-39566409) |
|
3-237, gnl|rheMac2|chr3 (7407359-7406904) |
| |
|
238-418, gnl|bosTau2|chr2 (62267797-62267976) |
|
238-418, gnl|Hg17|chr2 (208314634-208314458) |
|
238-418, gnl|Mm7|chr1 (64858170-64858000) |
| |
|
526-942, gnl|bosTau2|chr2 (62275130-62275546) |
|
526-942, gnl|Hg17|chr2 (208303677-208303261) |
|
526-942, gnl|Mm7|chr1 (64849869-64849453) |
|
pro (0.512033) |
|
pan (0.471921) |
|
aor (0.390549) |
|
liv (0.292569) |
|
lin (0.291206) |
|
cbe (0.239234) |
|
gul (0.177588) |
|
fbs (0.175346) |
|
rec (0.17307) |
|
cut (0.169924) |
|
cki (0.165235) |
|
bfe (0.149858) |
|
ski (0.146735) |
|
spl (0.143184) |
|
nca (0.136874) |
|
che (0.136314) |
|
ssp (0.13552) |
|
kid (0.129735) |
|
ova (0.129132) |
|
thg (0.126791) |
|
clu (0.119646) |
|
jca (0.11396) |
|
pro (0.512033) |
|
pan (0.471921) |
|
aor (0.390549) |
|
liv (0.292569) |
|
lin (0.291206) |
|
cbe (0.239234) |
|
gul (0.177588) |
|
fbs (0.175346) |
|
rec (0.17307) |
|
cut (0.169924) |
|
cki (0.165235) |
|
bfe (0.149858) |
|
ski (0.146735) |
|
spl (0.143184) |
|
nca (0.136874) |
|
che (0.136314) |
|
ssp (0.13552) |
|
kid (0.129735) |
|
ova (0.129132) |
|
thg (0.126791) |
|
clu (0.119646) |
|
jca (0.11396) |
