Ss1.1-rlin33_m5.5
|
ATTGAGAAAGGGAAAAGGACTTGTATTGTCATTTGCCATCAGATAAAAATCGTATTAAAA
ACTGACTACATGACTGGGTCCCAAATTCTGGAGCTAATAACCAAGTGAGAGGCCATTTGG
GCTTTTCAATTTCAAATAACATTATTTAATTCCATATAAGAATTGAACTCTTGCCAGCAG
ATGGCAGATTTTTGGTCCTCAAATTCCTATAATGGAAGATTTTCACCTCTCTGAGTTTGC
AGTCTTCAGTTTCCTGATGGTGGGGTTCCCAGGTGCATGGGTGCTACTTTCAAGGCCATA
GAATCCAGGCGGCCCACCAGTTCTTGACCCTGAAATGAACCTTAAGCCTTAGAACAGTCA
CGCAGCTGCCCCGTTTGATGACACGATGGCTCGCCTGTGCTCTAGTCTTGCTGCTTAAGC
CCGTGGTAGCCTTGTACTGAAAGCGCACAGCATTGCTAGGCACTGTTGAAGATTTGGGCC
TGACCCTTCAGTGTATATTTAAAAGCAGATCTCACTGCCCTGTCACGCAACAGAGCGTGC
TTGTCCTCTGGTCTCTTCACGTGCGTGAGCTCAACCCCATGAGGCAGCCACCCATCAAAA
CAGGTTGTTTCTCGGAACATAAAATATTACCCACGTTTCCTAATGGGTTGACATGAACTG
CTTTAAGCACCGGTGTATCTTCAGAACATTGAAATTCCTAAATATCAGAAGGTGTTGATT
GATGGTGGAGTTTACTCCCCAAATGCCATCTGAACACCTGATGTTTGCAATGCTATTTAA
TGTGCCTCAGTTTATGCAACTGTAAAAACTTGTTTTTTGAATATAAATTCCCCTCGCTCG
TATCTCAGCAAGGAGCATTCTCCGCTGGTAGGCTAAGTGCACCCCATATTGTACCCATTG
TTACGATAGAACTCCACTTTGAAATGGCCATTTTACCTCATAAGACCAGAAATTTGATTC
ATATGCAAGTGATGGGAGATTTTGGTGGAAAGATAACAGGATATATTTCCCCTAAAGCAT
CCCTCACTGGCTTACATGACACCATTGCTTTTAAATAGATATTTTGGCCAAATGGAATAC
ACTGAGTAGTTACAATACATTTAAAACTGAGGGAGAAGTCTAGTTATTTTAGGTCTGGCA
TCGAAGTTTCACTTTAATTTTTAAAAACAGTCCTTTTTTTAGAGTATATGCATTATTTAA
TACTTGTCATCTGAATAGATAGACCATACTTTTAGACTGTCTTTTGACTTTAAAAAGCAT
ACAGGTCTGACTATAAGGAGAATTAAATTTACCATGTAAACACTTCATCTCTTTATGAAC
ATATTGAATATTGTAAGAAAGCTCTTTCATTTTTATCTTTAATGTACTTATTATAACATA
GGGAATGAATGAATGTGGATTGCCGTCAACTATGAACACTTCTGTTTATCAGCATTTATT
GACCACCTACTGTGTGCACATCACTACTGATACCAATTTTTAGGACATTGTTAACATTAA
AGGATAACCACTTAAAAATCGCCTCTGAATCTGAGCCTTGTAATAATGTGTATTTATTTT
CATTTTGTAGATTTATTAAAATAAGATTATTCAGCTTCAGTCTAAGCCTGGTTTTAATTT
TAACAATGTGTAAATTATAAAAGCTCTACCTGCAGACTTTACAAATACATTTGGTTGTTT
CAAGTTGTCTATAGTGATTTATAAGGTTGTAGTTAACTCACTGAAGAGAATTATCTTTCT
ACACAAAGCCATTTTCAGTAGCAACAGTGCTTGTCTTTTTCCTTCTACTGAGTGCGATTC
AGTAAGCTGCACGGCACGACGTGTGCGATGTAAATAAACTGGGTTTATTAAATATAAAAA
AAAAAAAAAAAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
ATTGAGAAAGGGAAAAGGACTTGTATTGTCATTTGCCATCAGATAAAAATCGTATTAAAA
ACTGACTACATGACTGGGTCCCAAATTCTGGAGCTAATAACCAAGTGAGAGGCCATTTGG
GCTTTTCAATTTCAAATAACATTATTTAATTCCATATAAGAATTGAACTCTTGCCAGCAG
ATGGCAGATTTTTGGTCCTCAAATTCCTATAATGGAAGATTTTCACCTCTCTGAGTTTGC
AGTCTTCAGTTTCCTGATGGTGGGGTTCCCAGGTGCATGGGTGCTACTTTCAAGGCCATA
GAATCCAGGCGGCCCACCAGTTCTTGACCCTGAAATGAACCTTAAGCCTTAGAACAGTCA
CGCAGCTGCCCCGTTTGATGACACGATGGCTCGCCTGTGCTCTAGTCTTGCTGCTTAAGC
CCGTGGTAGCCTTGTACTGAAAGCGCACAGCATTGCTAGGCACTGTTGAAGATTTGGGCC
TGACCCTTCAGTGTATATTTAAAAGCAGATCTCACTGCCCTGTCACGCAACAGAGCGTGC
TTGTCCTCTGGTCTCTTCACGTGCGTGAGCTCAACCCCATGAGGCAGCCACCCATCAAAA
CAGGTTGTTTCTCGGAACATAAAATATTACCCACGTTTCCTAATGGGTTGACATGAACTG
CTTTAAGCACCGGTGTATCTTCAGAACATTGAAATTCCTAAATATCAGAAGGTGTTGATT
GATGGTGGAGTTTACTCCCCAAATGCCATCTGAACACCTGATGTTTGCAATGCTATTTAA
TGTGCCTCAGTTTATGCAACTGTAAAAACTTGTTTTTTGAATATAAATTCCCCTCGCTCG
TATCTCAGCAAGGAGCATTCTCCGCTGGTAGGCTAAGTGCACCCCATATTGTACCCATTG
TTACGATAGAACTCCACTTTGAAATGGCCATTTTACCTCATAAGACCAGAAATTTGATTC
ATATGCAAGTGATGGGAGATTTTGGTGGAAAGATAACAGGATATATTTCCCCTAAAGCAT
CCCTCACTGGCTTACATGACACCATTGCTTTTAAATAGATATTTTGGCCAAATGGAATAC
ACTGAGTAGTTACAATACATTTAAAACTGAGGGAGAAGTCTAGTTATTTTAGGTCTGGCA
TCGAAGTTTCACTTTAATTTTTAAAAACAGTCCTTTTTTTAGAGTATATGCATTATTTAA
TACTTGTCATCTGAATAGATAGACCATACTTTTAGACTGTCTTTTGACTTTAAAAAGCAT
ACAGGTCTGACTATAAGGAGAATTAAATTTACCATGTAAACACTTCATCTCTTTATGAAC
ATATTGAATATTGTAAGAAAGCTCTTTCATTTTTATCTTTAATGTACTTATTATAACATA
GGGAATGAATGAATGTGGATTGCCGTCAACTATGAACACTTCTGTTTATCAGCATTTATT
GACCACCTACTGTGTGCACATCACTACTGATACCAATTTTTAGGACATTGTTAACATTAA
AGGATAACCACTTAAAAATCGCCTCTGAATCTGAGCCTTGTAATAATGTGTATTTATTTT
CATTTTGTAGATTTATTAAAATAAGATTATTCAGCTTCAGTCTAAGCCTGGTTTTAATTT
TAACAATGTGTAAATTATAAAAGCTCTACCTGCAGACTTTACAAATACATTTGGTTGTTT
CAAGTTGTCTATAGTGATTTATAAGGTTGTAGTTAACTCACTGAAGAGAATTATCTTTCT
ACACAAAGCCATTTTCAGTAGCAACAGTGCTTGTCTTTTTCCTTCTACTGAGTGCGATTC
AGTAAGCTGCACGGCACGACGTGTGCGATGTAAATAAACTGGGTTTATTAAATATAAAAA
AAAAAAAAAAAA
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
2-813, gnl|bosTau2|chr19 (35905021-35905840) |
|
2-813, gnl|canFam2|chr32 (6259623-6260199) |
|
2-813, gnl|echTel1|scaffold_308307 (1894-1350) |
|
2-813, gnl|hg17|chr4 (80197413-80197985) |
|
2-813, gnl|Hg17|chr4 (80198243-80197434) |
|
2-813, gnl|loxAfr1|scaffold_21581 (27717-27145) |
|
2-813, gnl|mm7|chr5 (96307853-96308382) |
|
2-813, gnl|Mm7|chr5 (96308614-96307873) |
|
2-813, gnl|monDom2|scaffold_37 (22766541-22765917) |
|
2-813, gnl|oryCun1|scaffold_207728 (53053-53573) |
|
2-813, gnl|panTro1|chr3 (53529769-53529195) |
|
2-813, gnl|rheMac2|chr5 (50680845-50680277) |
|
2-813, gnl|rn3|chr14 (13931645-13931153) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
2-813, gnl|bosTau2|chr19 (35905021-35905840) |
|
2-813, gnl|canFam2|chr32 (6259623-6260199) |
|
2-813, gnl|echTel1|scaffold_308307 (1894-1350) |
|
2-813, gnl|hg17|chr4 (80197413-80197985) |
|
2-813, gnl|Hg17|chr4 (80198243-80197434) |
|
2-813, gnl|loxAfr1|scaffold_21581 (27717-27145) |
|
2-813, gnl|mm7|chr5 (96307853-96308382) |
|
2-813, gnl|Mm7|chr5 (96308614-96307873) |
|
2-813, gnl|monDom2|scaffold_37 (22766541-22765917) |
|
2-813, gnl|oryCun1|scaffold_207728 (53053-53573) |
|
2-813, gnl|panTro1|chr3 (53529769-53529195) |
|
2-813, gnl|rheMac2|chr5 (50680845-50680277) |
|
2-813, gnl|rn3|chr14 (13931645-13931153) |
|
cbe (0.956938) |
|
ret (0.643666) |
|
fco (0.628832) |
|
gul (0.532765) |
|
cbl (0.45919) |
|
tra (0.369276) |
|
fce (0.271592) |
|
mgp (0.230681) |
|
spc (0.226732) |
|
ldo (0.194005) |
|
mcp (0.170648) |
|
mga (0.160205) |
|
cli (0.152812) |
|
isp (0.150376) |
|
lin (0.145603) |
|
spl (0.143184) |
|
ssp (0.13552) |
|
ste (0.135208) |
|
bla (0.124347) |
|
pgl (0.118483) |
|
cbe (0.956938) |
|
ret (0.643666) |
|
fco (0.628832) |
|
gul (0.532765) |
|
cbl (0.45919) |
|
tra (0.369276) |
|
fce (0.271592) |
|
mgp (0.230681) |
|
spc (0.226732) |
|
ldo (0.194005) |
|
mcp (0.170648) |
|
mga (0.160205) |
|
cli (0.152812) |
|
isp (0.150376) |
|
lin (0.145603) |
|
spl (0.143184) |
|
ssp (0.13552) |
|
ste (0.135208) |
|
bla (0.124347) |
|
pgl (0.118483) |
