Non-Coding RNA Search

Ss1.1-rlin34_l15.5

Sequence:


               
               TCTAAACATTCTAAAGTGTATATACTGCATTTTTAATATTGTTTTAGTCTTGAGGCATGA
CTTTCTTCATAATGCAAATGGAGATTCCCAACCAAGCGTTGACTATTATAATTCCATTTT
ATTGGAGTTTACTTTCTACTTTGTATTCCCTGAAATCCAGCACTGAATTTACATTTCCTC
TGTTACCCACCCTCTCTGCAAAATTTAAATTTAAAAAGTGCTTTAAGAATGTATTTTTAC
TCCTGCAAGGTTTTGGTCTTTGGTTCTTCATTCATCTTTCTGTCTTTCTCTCTCCTCCTC
TCTTCCCCTCTCTCCCCCTCTCCCTCTCTTTCTCTTCTTTTCTTAAAATTCCTACTTGGT
TGGAGACTATAAATATTTTTAAAAGCCATCTCCCTTTTCCTCTCTTATTAAGTGAGTTAT
TCTGTGTTTCTGTTTTATGTAAGCACATGTATTCTTGGCTTTTCTTAAAATAGACATAAT
GTTGACTTTATTGTTCCAAATATCTTGGTGATTGCTTCAATACTTCCTCAACAAAGACCC
TTTCATTCTGCCATCAAAAAGTAGAAATATGCCATGCTTTTATTAGATGTAACATTTTAT
GTTAACAAAAGGACTAGTGTAATTAAAATTGGGATGTGGATATTTAGTATATAGTAGTGT
ATTTACAGTTCATTATTGCAAAGACACAGTTTATAACTGCAAAATAGTGATGGTTTTTGA
AATAAGCCTTGAAATATAGGGATCATGAAAGCTCTCTAGGAATAACTGTTTTATAGTTTT
TTAGATGAGATAGCTAGTTATGTCTATGTGTTTGTAAAGTTTTTTAAAAATATTTTTGGA
TTACAGTTCTTAACAAATGTAGAAGTGCTCCAAATTATATGAATTTTGAATTTTAAGACA
AAATTAAACTTAATAGCCATACAAAATCCAGACTAATTCTACAGCTAATTTCAGTCAATG
AATTTTGATGTATGTTAACTGTATGGACATTTTAAATATATTTCTAATATTTAGGATTGT
TAATAATATGTCTATTTTGAATTCACAAAGTTGGCTTTTGACTTATTTTTAAGGATTAAC
ATTGGGTAATTTGATAATCAGTTTGTCTTTTCAACATTTTCATTTCTGCTCAGTCAAAAA
TACTATTTCTCAAAGTTATTTTTAATAAATTTTGTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCTAAACATTCTAAAGTGTATATACTGCATTTTTAATATTGTTTTAGTCTTGAGGCATGA
CTTTCTTCATAATGCAAATGGAGATTCCCAACCAAGCGTTGACTATTATAATTCCATTTT
ATTGGAGTTTACTTTCTACTTTGTATTCCCTGAAATCCAGCACTGAATTTACATTTCCTC
TGTTACCCACCCTCTCTGCAAAATTTAAATTTAAAAAGTGCTTTAAGAATGTATTTTTAC
TCCTGCAAGGTTTTGGTCTTTGGTTCTTCATTCATCTTTCTGTCTTTCTCTCTCCTCCTC
TCTTCCCCTCTCTCCCCCTCTCCCTCTCTTTCTCTTCTTTTCTTAAAATTCCTACTTGGT
TGGAGACTATAAATATTTTTAAAAGCCATCTCCCTTTTCCTCTCTTATTAAGTGAGTTAT
TCTGTGTTTCTGTTTTATGTAAGCACATGTATTCTTGGCTTTTCTTAAAATAGACATAAT
GTTGACTTTATTGTTCCAAATATCTTGGTGATTGCTTCAATACTTCCTCAACAAAGACCC
TTTCATTCTGCCATCAAAAAGTAGAAATATGCCATGCTTTTATTAGATGTAACATTTTAT
GTTAACAAAAGGACTAGTGTAATTAAAATTGGGATGTGGATATTTAGTATATAGTAGTGT
ATTTACAGTTCATTATTGCAAAGACACAGTTTATAACTGCAAAATAGTGATGGTTTTTGA
AATAAGCCTTGAAATATAGGGATCATGAAAGCTCTCTAGGAATAACTGTTTTATAGTTTT
TTAGATGAGATAGCTAGTTATGTCTATGTGTTTGTAAAGTTTTTTAAAAATATTTTTGGA
TTACAGTTCTTAACAAATGTAGAAGTGCTCCAAATTATATGAATTTTGAATTTTAAGACA
AAATTAAACTTAATAGCCATACAAAATCCAGACTAATTCTACAGCTAATTTCAGTCAATG
AATTTTGATGTATGTTAACTGTATGGACATTTTAAATATATTTCTAATATTTAGGATTGT
TAATAATATGTCTATTTTGAATTCACAAAGTTGGCTTTTGACTTATTTTTAAGGATTAAC
ATTGGGTAATTTGATAATCAGTTTGTCTTTTCAACATTTTCATTTCTGCTCAGTCAAAAA
TACTATTTCTCAAAGTTATTTTTAATAAATTTTGTA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               2-664, gnl|bosTau2|chr24 (20413962-20413286)
               

               
               2-664, gnl|Hg17|chr18 (26901546-26900903)
               

               
               2-664, gnl|Mm7|chr18 (20405138-20404528)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-664, gnl|bosTau2|chr24 (20413962-20413286)
               

               
               2-664, gnl|Hg17|chr18 (26901546-26900903)
               

               
               2-664, gnl|Mm7|chr18 (20405138-20404528)

Expressed library(ies): 5 entry(ies)

More info

Expressed library(ies): 5 entry(ies)

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               ret (0.7724)
               

               
               lin (0.728014)
               

               
               jej (0.197844)
               

               
               ton (0.1755)
               

               
               tra (0.123092)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ret (0.7724)
               

               
               lin (0.728014)
               

               
               jej (0.197844)
               

               
               ton (0.1755)
               

               
               tra (0.123092)

	2-664, gnl\|bosTau2\|chr24 (20413962-20413286)
	2-664, gnl\|Hg17\|chr18 (26901546-26900903)
	2-664, gnl\|Mm7\|chr18 (20405138-20404528)

	ret (0.7724)
	lin (0.728014)
	jej (0.197844)
	ton (0.1755)
	tra (0.123092)