Non-Coding RNA Search

Ss1.1-rlin35_b23.5

Sequence:


               
               AGAAAAGAGAACCAGGTACCAAGACAAAGAAACAAACTACTTTGCCATTTAAACCAATTA
AGAAAGCAAAGAAGAGAAACCCCTGGTCTGATTCAGAATCAGATATAAGCAGTGATGAAA
GTAATTTCAATGTCCCTCCACGAGAAAAAGAGCCACGGAGAGCAGCAGCGAAAACCAAAT
TCACAGTGGACTTGGATTCAGATGAAGATTTCTCAGATGCTGATGAAAAAACTCGAGATG
AAGATTTTGTTCCATCAGATACTAGTCCACAAAAGGCCGAAACTTCCCCTAAACATACTA
ACAAAGAACCGAAGCCACAGAAAAGTACCCCATCAGTCTCAGACTTTGACGCCGACGATG
CCAAGGATAATGTACCGCCTTCTCCAAGCTCTCCGGTTGCTGATTTCCCAGCTGTAACTG
AAACTATAAAACCTGTTTCTAAGAAGAACGTGACAGTGAAGAAGACAGCAGCAAAAAGTC
AGTCTTCCACCTCTACTACAGGCGCCAAAAAAAGGGCTGCACCGAAAGGAGCCAAAAAGG
ATCCAGACTTGGATTCTGATGTCTCTAAAAAGCCTAATCCCCCCAAACCTAAGGGTCGCC
GCAAAAGGAAGCCATCCACTTCTGATGATTCCGACTCTAATTTCGAGAAAATGATTTCTA
AAGCAGTCACAAGCAAGAAACCCAAGGGGGAGAGCGATGACTTCCATCTGGACTTAGACT
TGGCTGTGGCTTCTCGGGCAAAATCTGGACGGACCAAGAAGCCAATTAAGTACCTTGAAG
AATCAGATGAAGATGATCTGTTTTAAGATGTGAGGTGATTCTTTTAAGTAATGGCCTCTT
TGAGCCCAAGACTGGTTTTAAAGTTACCTGAACCTCTTAATCTCCTCCCCTGCGAGTTGA
GTTTGGGGAAGGTAACTGAACTCAGAACCACAAAGTGAAGTGTGTAGAACCCAAGTGGCC
CTTAATGTTTCTAATACTGTCTAAGTCGTGACTGTCTTGTGGGCGTTGTTTTCTTCTCTG
CTTTGTGTATGTACTGAGTCTGTTTTCCTTTTAAATCTGATTTTAAGTTTTTCTGGCCTC
CAGAGATCGTTCTATGGTCACTTCAGCATAATGTATTTTGACCATTCATTAAGCTAAACT
TAGAGCATTTTGACCTAAAAGTTTCTACTCTGCCTACATTCAGTAAATATGAGATTAGGC
ATGATTAAATCTCTATTTTATCTTAGTTGTGTAGATAATTTTCCATTAGATAGACTTTAT
GTAGTTCCAATATCAAATATTCCTCTCAGCCTTTTATCTGCTGAATTTTTGTTTAAGCAG
TGAAAATTGTTCATGTTCTTTGCATCCATCTGAATATCAACAGAAGCTGAGCAAAAACCA
TGACTGTGTCTACAGAACCTCAACACAGTCAACAGGATGAAGAAATTTAGACCATAACGT
AGATTATCTCAATTCTTGACTTAACCCCTCTGGCTGCCTGAGTCTGAATGTCCCCAAGAA
CAAAATTTCTAGGCGGCGCTAGATCACAGGGAGTGGGGACAACATTCACTCCAGAGATCT
TACATATTACGTTGATGCCAAACCGAGCCGTGAACTAACTGTTCTATCCATTTTGAGAAA
TCTCCAGATTTTCCACTTGTCAACTTTTTTAAGACCTTCCTGTATTTGTTACATGTGTGT
GACCTGAGTGGTATTATCAATGTTTTTGTAAATATTTACTATGTTTTTCTATTCAGCTTA
ATTCCAACAATTTTGTACTTTAATAAAATGTTGTGAACATCTCAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGAAAAGAGAACCAGGTACCAAGACAAAGAAACAAACTACTTTGCCATTTAAACCAATTA
AGAAAGCAAAGAAGAGAAACCCCTGGTCTGATTCAGAATCAGATATAAGCAGTGATGAAA
GTAATTTCAATGTCCCTCCACGAGAAAAAGAGCCACGGAGAGCAGCAGCGAAAACCAAAT
TCACAGTGGACTTGGATTCAGATGAAGATTTCTCAGATGCTGATGAAAAAACTCGAGATG
AAGATTTTGTTCCATCAGATACTAGTCCACAAAAGGCCGAAACTTCCCCTAAACATACTA
ACAAAGAACCGAAGCCACAGAAAAGTACCCCATCAGTCTCAGACTTTGACGCCGACGATG
CCAAGGATAATGTACCGCCTTCTCCAAGCTCTCCGGTTGCTGATTTCCCAGCTGTAACTG
AAACTATAAAACCTGTTTCTAAGAAGAACGTGACAGTGAAGAAGACAGCAGCAAAAAGTC
AGTCTTCCACCTCTACTACAGGCGCCAAAAAAAGGGCTGCACCGAAAGGAGCCAAAAAGG
ATCCAGACTTGGATTCTGATGTCTCTAAAAAGCCTAATCCCCCCAAACCTAAGGGTCGCC
GCAAAAGGAAGCCATCCACTTCTGATGATTCCGACTCTAATTTCGAGAAAATGATTTCTA
AAGCAGTCACAAGCAAGAAACCCAAGGGGGAGAGCGATGACTTCCATCTGGACTTAGACT
TGGCTGTGGCTTCTCGGGCAAAATCTGGACGGACCAAGAAGCCAATTAAGTACCTTGAAG
AATCAGATGAAGATGATCTGTTTTAAGATGTGAGGTGATTCTTTTAAGTAATGGCCTCTT
TGAGCCCAAGACTGGTTTTAAAGTTACCTGAACCTCTTAATCTCCTCCCCTGCGAGTTGA
GTTTGGGGAAGGTAACTGAACTCAGAACCACAAAGTGAAGTGTGTAGAACCCAAGTGGCC
CTTAATGTTTCTAATACTGTCTAAGTCGTGACTGTCTTGTGGGCGTTGTTTTCTTCTCTG
CTTTGTGTATGTACTGAGTCTGTTTTCCTTTTAAATCTGATTTTAAGTTTTTCTGGCCTC
CAGAGATCGTTCTATGGTCACTTCAGCATAATGTATTTTGACCATTCATTAAGCTAAACT
TAGAGCATTTTGACCTAAAAGTTTCTACTCTGCCTACATTCAGTAAATATGAGATTAGGC
ATGATTAAATCTCTATTTTATCTTAGTTGTGTAGATAATTTTCCATTAGATAGACTTTAT
GTAGTTCCAATATCAAATATTCCTCTCAGCCTTTTATCTGCTGAATTTTTGTTTAAGCAG
TGAAAATTGTTCATGTTCTTTGCATCCATCTGAATATCAACAGAAGCTGAGCAAAAACCA
TGACTGTGTCTACAGAACCTCAACACAGTCAACAGGATGAAGAAATTTAGACCATAACGT
AGATTATCTCAATTCTTGACTTAACCCCTCTGGCTGCCTGAGTCTGAATGTCCCCAAGAA
CAAAATTTCTAGGCGGCGCTAGATCACAGGGAGTGGGGACAACATTCACTCCAGAGATCT
TACATATTACGTTGATGCCAAACCGAGCCGTGAACTAACTGTTCTATCCATTTTGAGAAA
TCTCCAGATTTTCCACTTGTCAACTTTTTTAAGACCTTCCTGTATTTGTTACATGTGTGT
GACCTGAGTGGTATTATCAATGTTTTTGTAAATATTTACTATGTTTTTCTATTCAGCTTA
ATTCCAACAATTTTGTACTTTAATAAAATGTTGTGAACATCTCAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               Q52KI5_MOUSE

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q52KI5_MOUSE

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               12-168, gnl|bosTau2|chr19 (34271869-34272025)
               

               
               12-168, gnl|Hg17|chr17 (35802519-35802363)
               

               
               12-168, gnl|Mm7|chr11 (99105918-99105768)
               


               
               478-677, gnl|bosTau2|chr19 (34273532-34273731)
               

               
               478-677, gnl|Hg17|chr17 (35799942-35799743)
               

               
               478-677, gnl|Mm7|chr11 (99103445-99103246)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               12-168, gnl|bosTau2|chr19 (34271869-34272025)
               

               
               12-168, gnl|Hg17|chr17 (35802519-35802363)
               

               
               12-168, gnl|Mm7|chr11 (99105918-99105768)
               


               
               478-677, gnl|bosTau2|chr19 (34273532-34273731)
               

               
               478-677, gnl|Hg17|chr17 (35799942-35799743)
               

               
               478-677, gnl|Mm7|chr11 (99103445-99103246)

Expressed library(ies): 16 entry(ies)

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Expressed library(ies): 16 entry(ies)

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               spl (0.429553)
               

               
               tes (0.415628)
               

               
               elu (0.385356)
               

               
               cbl (0.344392)
               

               
               lin (0.291206)
               

               
               fce (0.271592)
               

               
               col (0.195008)
               

               
               nco (0.161734)
               

               
               lnt (0.142308)
               

               
               pla (0.133672)
               

               
               ova (0.129132)
               

               
               thg (0.126791)
               

               
               eep (0.122564)
               

               
               ecc (0.115035)
               

               
               cty (0.10408)
               

               
               nbm (0.0993246)

Expressed library(ies): 16 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               spl (0.429553)
               

               
               tes (0.415628)
               

               
               elu (0.385356)
               

               
               cbl (0.344392)
               

               
               lin (0.291206)
               

               
               fce (0.271592)
               

               
               col (0.195008)
               

               
               nco (0.161734)
               

               
               lnt (0.142308)
               

               
               pla (0.133672)
               

               
               ova (0.129132)
               

               
               thg (0.126791)
               

               
               eep (0.122564)
               

               
               ecc (0.115035)
               

               
               cty (0.10408)
               

               
               nbm (0.0993246)

	12-168, gnl\|bosTau2\|chr19 (34271869-34272025)
	12-168, gnl\|Hg17\|chr17 (35802519-35802363)
	12-168, gnl\|Mm7\|chr11 (99105918-99105768)

	478-677, gnl\|bosTau2\|chr19 (34273532-34273731)
	478-677, gnl\|Hg17\|chr17 (35799942-35799743)
	478-677, gnl\|Mm7\|chr11 (99103445-99103246)

	spl (0.429553)
	tes (0.415628)
	elu (0.385356)
	cbl (0.344392)
	lin (0.291206)
	fce (0.271592)
	col (0.195008)
	nco (0.161734)
	lnt (0.142308)
	pla (0.133672)
	ova (0.129132)
	thg (0.126791)
	eep (0.122564)
	ecc (0.115035)
	cty (0.10408)
	nbm (0.0993246)