Non-Coding RNA Search

Ss1.1-rlin35_h11.5

Sequence:


               
               GGCAAGTGATCCTTTCAGTGTCGCCTCCAGCTTGCGCTAAAATCTTACTGTCTCTCACCT
TTTCTATTTGGACGTTTGTTACCTTACTGTCAGCACTTGCCTGGGATCCCTTCACATCTA
GAGAGATCTTAGTGCTGGTGTTGAACCATCCATTCTCGGCAACTGGCAGGAGTTTTAGAC
CACACATTTGCCTCATGGCAGGAGAGAACAGAAGGATCAAACACTGGATTTTGTCTAGTA
CTGTTGAATTTTCTATTTTATTTTAGTCTTTTCCAGAGCTGCAACCGTGGCATATGGAGG
TTCCCAGACTAAGGGTCTAATTGGAACTGTAGCCACTGGCCTTGCTCAGTGGGTGAAGAA
TCTGGTGTTGCCACGAGCTGCGGTATAAATTGCAGATGCGGCTCAGATTTGGCGTTGCCG
TTGCTGTGGCTGTGGAGTAGGCAGGGAAGAGATCAGCAATCTCCAGGCTATAGCCTAAGG
GTGATACCACAGTGTCCGTCAGGGCTTCACACATGCATTGTTACAGCTGGAGGCAGCACA
GGGGCTGCTGGTGGAAGCCATTACTGCAGGGATCCTAAGTGACCTGGGCTCTGGGGGCAA
TGTGGATGCATGTGTGATCATGGGGACCGGTGCCAAGCTGCTGCGAAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCAAGTGATCCTTTCAGTGTCGCCTCCAGCTTGCGCTAAAATCTTACTGTCTCTCACCT
TTTCTATTTGGACGTTTGTTACCTTACTGTCAGCACTTGCCTGGGATCCCTTCACATCTA
GAGAGATCTTAGTGCTGGTGTTGAACCATCCATTCTCGGCAACTGGCAGGAGTTTTAGAC
CACACATTTGCCTCATGGCAGGAGAGAACAGAAGGATCAAACACTGGATTTTGTCTAGTA
CTGTTGAATTTTCTATTTTATTTTAGTCTTTTCCAGAGCTGCAACCGTGGCATATGGAGG
TTCCCAGACTAAGGGTCTAATTGGAACTGTAGCCACTGGCCTTGCTCAGTGGGTGAAGAA
TCTGGTGTTGCCACGAGCTGCGGTATAAATTGCAGATGCGGCTCAGATTTGGCGTTGCCG
TTGCTGTGGCTGTGGAGTAGGCAGGGAAGAGATCAGCAATCTCCAGGCTATAGCCTAAGG
GTGATACCACAGTGTCCGTCAGGGCTTCACACATGCATTGTTACAGCTGGAGGCAGCACA
GGGGCTGCTGGTGGAAGCCATTACTGCAGGGATCCTAAGTGACCTGGGCTCTGGGGGCAA
TGTGGATGCATGTGTGATCATGGGGACCGGTGCCAAGCTGCTGCGAAC

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               1-262, gnl|bosTau2|chr7 (9632648-9632926)
               

               
               1-262, gnl|canFam2|chr20 (53902948-53902504)
               

               
               1-262, gnl|dasNov1|scaffold_69181 (5723-6090)
               

               
               1-262, gnl|hg17|chr19 (10137367-10137757)
               

               
               1-262, gnl|panTro1|chr20 (10519345-10519735)
               

               
               1-262, gnl|rheMac2|chr19 (9970111-9970498)
               


               
               450-646, gnl|bosTau2|chr18 (14939531-14939726)
               

               
               450-646, gnl|Hg17|chr16 (66526420-66526233)
               

               
               450-646, gnl|Mm7|chr8 (104535070-104534883)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-262, gnl|bosTau2|chr7 (9632648-9632926)
               

               
               1-262, gnl|canFam2|chr20 (53902948-53902504)
               

               
               1-262, gnl|dasNov1|scaffold_69181 (5723-6090)
               

               
               1-262, gnl|hg17|chr19 (10137367-10137757)
               

               
               1-262, gnl|panTro1|chr20 (10519345-10519735)
               

               
               1-262, gnl|rheMac2|chr19 (9970111-9970498)
               


               
               450-646, gnl|bosTau2|chr18 (14939531-14939726)
               

               
               450-646, gnl|Hg17|chr16 (66526420-66526233)
               

               
               450-646, gnl|Mm7|chr8 (104535070-104534883)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               lin (0.145603)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lin (0.145603)

	1-262, gnl\|bosTau2\|chr7 (9632648-9632926)
	1-262, gnl\|canFam2\|chr20 (53902948-53902504)
	1-262, gnl\|dasNov1\|scaffold_69181 (5723-6090)
	1-262, gnl\|hg17\|chr19 (10137367-10137757)
	1-262, gnl\|panTro1\|chr20 (10519345-10519735)
	1-262, gnl\|rheMac2\|chr19 (9970111-9970498)

	450-646, gnl\|bosTau2\|chr18 (14939531-14939726)
	450-646, gnl\|Hg17\|chr16 (66526420-66526233)
	450-646, gnl\|Mm7\|chr8 (104535070-104534883)