Non-Coding RNA Search

Ss1.1-rlin35_h23.5

Sequence:


               
               TTTTTGGAAAAGCTTTCTTTGAGGGAGTTGGAAATGGGAACAGGCCTTCTATTCTTGCCC
TGGTGACTAGAAAGTTCTTCATTCCTAATGGAGTATTTCTGATCATGCCCTTGATGCAGT
ATTTCCAGAATGACTTCTCAGAGTTTGTCCTGTGATGGTTCAGCAGCAGCAGAAGTTGTA
TCTGTCGGGAAGCATGTGAGAATATTTGGGGAAGTGCAGGAACAAATACTTGGCGTGTGG
TAAGAGTGATTCTGAGAGCCTTGGAGGTAGGGGTCATGTTTTAGACCTTCCTTGGAGTTC
CTGTCATGGCGCAGTGGTTGGCGAGTCCTACTAGGAACCATGAGGTGTGGGTTCCATCCC
TGGCCTTGCTCAGAGGGTTGAGGATCTGGCGTTGCCGTGAGCTGTGGTGTGGGTTGCAGA
TGCAGCTTGGATCCCTCGTTGCTGTGGCTCTGGCGTAGGCCGGTGGCTACAGCTCCGATT
CGACCCCCCTAGCCTGGGAGCCTCCATGTGCCGCGGGAGCGGCCCAAGAAATGGCAGAAA
GACAAAAAACAAACAAACAAAAACACCTTCCTTTATCCCATCAGGCCTGGTGCTGGGGCT
TGTATATCTCAGGTAGCTATTACACTTTGACTGAAAGAACTTGTTTTAAAGAAGTGAGTT
TGTTGGTTAATATAGATCTCAGAATTTGCAGTAGTTAGGAACAGAGGTATTGAGAAAACC
TACAATTTTAAAAAGTTATTGCCTTTCTTGATCTGTAATTATGGTTGACTTGCCCAGTTA
GGAGTCAAGAAGAGGCAGAGCATGCTGTGGTAAAATGATGCAGTCCCAATTTTTCATGAA
ATCCTTGTTTAGACCATAACCCTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTGGAAAAGCTTTCTTTGAGGGAGTTGGAAATGGGAACAGGCCTTCTATTCTTGCCC
TGGTGACTAGAAAGTTCTTCATTCCTAATGGAGTATTTCTGATCATGCCCTTGATGCAGT
ATTTCCAGAATGACTTCTCAGAGTTTGTCCTGTGATGGTTCAGCAGCAGCAGAAGTTGTA
TCTGTCGGGAAGCATGTGAGAATATTTGGGGAAGTGCAGGAACAAATACTTGGCGTGTGG
TAAGAGTGATTCTGAGAGCCTTGGAGGTAGGGGTCATGTTTTAGACCTTCCTTGGAGTTC
CTGTCATGGCGCAGTGGTTGGCGAGTCCTACTAGGAACCATGAGGTGTGGGTTCCATCCC
TGGCCTTGCTCAGAGGGTTGAGGATCTGGCGTTGCCGTGAGCTGTGGTGTGGGTTGCAGA
TGCAGCTTGGATCCCTCGTTGCTGTGGCTCTGGCGTAGGCCGGTGGCTACAGCTCCGATT
CGACCCCCCTAGCCTGGGAGCCTCCATGTGCCGCGGGAGCGGCCCAAGAAATGGCAGAAA
GACAAAAAACAAACAAACAAAAACACCTTCCTTTATCCCATCAGGCCTGGTGCTGGGGCT
TGTATATCTCAGGTAGCTATTACACTTTGACTGAAAGAACTTGTTTTAAAGAAGTGAGTT
TGTTGGTTAATATAGATCTCAGAATTTGCAGTAGTTAGGAACAGAGGTATTGAGAAAACC
TACAATTTTAAAAAGTTATTGCCTTTCTTGATCTGTAATTATGGTTGACTTGCCCAGTTA
GGAGTCAAGAAGAGGCAGAGCATGCTGTGGTAAAATGATGCAGTCCCAATTTTTCATGAA
ATCCTTGTTTAGACCATAACCCTT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               198-306, - strand, RNAz p=0.64165

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               198-306, - strand, RNAz p=0.64165

Aligned organism(s): 14 entry(ies)

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Aligned organism(s): 14 entry(ies)

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               4-306, gnl|bosTau2|chr8 (43842837-43842545)
               

               
               4-306, gnl|canFam2|chr11 (71782329-71783394)
               

               
               4-306, gnl|dasNov1|scaffold_27333 (41850-42872)
               

               
               4-306, gnl|echTel1|scaffold_298677 (35494-34535)
               

               
               4-306, gnl|hg17|chr9 (114430570-114431650)
               

               
               4-306, gnl|Hg17|chr9 (114431394-114431686)
               

               
               4-306, gnl|mm7|chr4 (62979342-62980335)
               

               
               4-306, gnl|Mm7|chr4 (62980099-62980352)
               

               
               4-306, gnl|oryCun1|scaffold_214303 (435933-436824)
               

               
               4-306, gnl|panTro1|chr11 (98966664-98967747)
               

               
               4-306, gnl|rheMac2|chr15 (21540017-21538948)
               

               
               4-306, gnl|rn3|chr5 (80521609-80522574)
               


               
               563-848, gnl|bosTau2|chr8 (43842565-43842286)
               

               
               563-848, gnl|Hg17|chr9 (114431670-114432579)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-306, gnl|bosTau2|chr8 (43842837-43842545)
               

               
               4-306, gnl|canFam2|chr11 (71782329-71783394)
               

               
               4-306, gnl|dasNov1|scaffold_27333 (41850-42872)
               

               
               4-306, gnl|echTel1|scaffold_298677 (35494-34535)
               

               
               4-306, gnl|hg17|chr9 (114430570-114431650)
               

               
               4-306, gnl|Hg17|chr9 (114431394-114431686)
               

               
               4-306, gnl|mm7|chr4 (62979342-62980335)
               

               
               4-306, gnl|Mm7|chr4 (62980099-62980352)
               

               
               4-306, gnl|oryCun1|scaffold_214303 (435933-436824)
               

               
               4-306, gnl|panTro1|chr11 (98966664-98967747)
               

               
               4-306, gnl|rheMac2|chr15 (21540017-21538948)
               

               
               4-306, gnl|rn3|chr5 (80521609-80522574)
               


               
               563-848, gnl|bosTau2|chr8 (43842565-43842286)
               

               
               563-848, gnl|Hg17|chr9 (114431670-114432579)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

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               lin (0.291206)
               

               
               kid (0.129735)

Expressed library(ies): 2 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lin (0.291206)
               

               
               kid (0.129735)

	4-306, gnl\|bosTau2\|chr8 (43842837-43842545)
	4-306, gnl\|canFam2\|chr11 (71782329-71783394)
	4-306, gnl\|dasNov1\|scaffold_27333 (41850-42872)
	4-306, gnl\|echTel1\|scaffold_298677 (35494-34535)
	4-306, gnl\|hg17\|chr9 (114430570-114431650)
	4-306, gnl\|Hg17\|chr9 (114431394-114431686)
	4-306, gnl\|mm7\|chr4 (62979342-62980335)
	4-306, gnl\|Mm7\|chr4 (62980099-62980352)
	4-306, gnl\|oryCun1\|scaffold_214303 (435933-436824)
	4-306, gnl\|panTro1\|chr11 (98966664-98967747)
	4-306, gnl\|rheMac2\|chr15 (21540017-21538948)
	4-306, gnl\|rn3\|chr5 (80521609-80522574)

	563-848, gnl\|bosTau2\|chr8 (43842565-43842286)
	563-848, gnl\|Hg17\|chr9 (114431670-114432579)