Non-Coding RNA Search

Ss1.1-rlin35_n21.5.5

Sequence:


               
               GTTTGTGTACCTCCCTTTTTGTTCCACAGATGCTCTAAAGGTACATCCTCAGAGGTTTAG
AGTTAATACAGTTAGTGTTGTACTGTTTCATCAAGGACATTCTTAAGTCAGACACCTTTT
CTCTCCCCTGCCAGTGTGTGGTTCTGTGGAATGTTGTGACTAGAAACACAGTTTGCTGCC
TTGTGTCTCGATTAGTTACCAGTAGGTTGACCCACCTTTGCTTTTTCACAATCCCTGCAA
ATGTCAACACAGTGAAAAGAGCAAATAATGTCTTGGTATTATGAAAACAGTTTTGACCTT
TTGGCCTTCTGCAGAGGTCTCAGGAAACCCCAGGGTCCATGTACCACACTTTGAGAACCA
CTATTTTATTTCTTATGGAATCCCACACATTCATTTTTCATATCAGACTCTGTGATGATT
ACTCCTTAATCTAATGGTATCAAATCTCAAGCTATTTTCTGTGCAACCATTGCTTCCATC
ATTTAAGAAAAACACTATAAAGTCATTAACACTAATTTTTTCTCTTCTCGAATAATCGTA
AAATTGACTTAACATTGTTTTACTGTCCTTTTATACTTCCACCTTGATTGTTTGTTTCCT
GTTGACATTAGATTCTGATTAACA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTTGTGTACCTCCCTTTTTGTTCCACAGATGCTCTAAAGGTACATCCTCAGAGGTTTAG
AGTTAATACAGTTAGTGTTGTACTGTTTCATCAAGGACATTCTTAAGTCAGACACCTTTT
CTCTCCCCTGCCAGTGTGTGGTTCTGTGGAATGTTGTGACTAGAAACACAGTTTGCTGCC
TTGTGTCTCGATTAGTTACCAGTAGGTTGACCCACCTTTGCTTTTTCACAATCCCTGCAA
ATGTCAACACAGTGAAAAGAGCAAATAATGTCTTGGTATTATGAAAACAGTTTTGACCTT
TTGGCCTTCTGCAGAGGTCTCAGGAAACCCCAGGGTCCATGTACCACACTTTGAGAACCA
CTATTTTATTTCTTATGGAATCCCACACATTCATTTTTCATATCAGACTCTGTGATGATT
ACTCCTTAATCTAATGGTATCAAATCTCAAGCTATTTTCTGTGCAACCATTGCTTCCATC
ATTTAAGAAAAACACTATAAAGTCATTAACACTAATTTTTTCTCTTCTCGAATAATCGTA
AAATTGACTTAACATTGTTTTACTGTCCTTTTATACTTCCACCTTGATTGTTTGTTTCCT
GTTGACATTAGATTCTGATTAACA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               389-505, - strand, RNAz p=0.940705

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               389-505, - strand, RNAz p=0.940705

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

Help | Less info


               
               137-603, gnl|bosTau2|chr27 (118476-118962)
               

               
               137-603, gnl|Hg17|chr6 (18361083-18360290)

Aligned organism(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               137-603, gnl|bosTau2|chr27 (118476-118962)
               

               
               137-603, gnl|Hg17|chr6 (18361083-18360290)

Expressed library(ies): 4 entry(ies)

More info

Expressed library(ies): 4 entry(ies)

Help | Less info


               
               aor (0.195274)
               

               
               eye (0.170503)
               

               
               lin (0.145603)
               

               
               eru (0.120048)

Expressed library(ies): 4 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               aor (0.195274)
               

               
               eye (0.170503)
               

               
               lin (0.145603)
               

               
               eru (0.120048)

	137-603, gnl\|bosTau2\|chr27 (118476-118962)
	137-603, gnl\|Hg17\|chr6 (18361083-18360290)