Non-Coding RNA Search

Ss1.1-rlin36_b23.5

Sequence:


               
               CAGGTTTTAAAGGTACTTCCTCTCATCTTCCCCAAAGAAAATGGTTTTAACTTAATAGTT
TGTCAAAGTTTGTAAATTGTACCCATGGATTTTTGTCAAATTCCAACAATAAGGGTGTAG
AAGAGGGCCAGAAATAGACCTTTACTTTTCATTTGGAAGCATTTGACAGCTTTCTAAACT
TTTCTTCCTGTTTGGGGATTTTTCAATTAATATATTCTATGTATATAAAATATGGTTCAC
TCCTGTAAAATGAAATTGCTGGAATCAATCAAGCCAGTGCACCATTAGAATTATTTATAA
GGAACGATTGTGTTTGACACTAGTAGTCAAGTCTGGACTATATTCTGCAGTTAGCCACTT
TTGTCTTAAAGCATATTTTAAACACTTTGAGGTTGTAATAGAACTAAAACTCACAGTTCA
GTATATTTATATTTTTAAAGTATAATATGACCTCAGCTCAGTGGAGGAATGCTGTATTAT
GCAGGTTTGTGTCAATTTCCTAACATTAAAATGACCTGGTTTTATCAGTTTCTTAAAATT
ATGATCAGTGAGTGGTCTAGCAATTTAAGGCAGTAGTAAGTTATGAGTAAAATGAGGCTC
TGCAGGCATTTAAATGCTCAACTGCTTTCAGTGTCCACTTTATATGATTACTCACTTATG
CCACAATAGATAAATCTTTGAAAATGAATGCTTTTAAATTATAATTTAAAAAGAGCAGGT
GCAGGTCACAGAAAAATTTTAAAGTATGCCTTCTTGCCAGCAATAGTTCATTATAAAGTA
AGCCAGGTTTTTGCCAAGATCAGTGTTTGTTTCTTCAAAACAAAGGTAGAAATAGATTTG
TAATAGTGTGCTCTTGTACCTCTACATGGGTTCTTAATTTTGAGCAGTTATGCATTTATA
TAGAGGAAATAAATCAACTGTGAATAAATGCATGTTTACCAAAATGATTGTTTTACAGTG
CATTTAGTTCTGATATTTATAAAGTTGACATTTCACACAATAACTTTTAAATAGTTTGGA
ATTCTATATAGTTTAGACATCAGTCACATCTGGAGACAAAGAAAAATGTGCAATATTTTT
TATGTAGGTGAGCTAACACAGTGTACCTAATTGCAGAATTAATTATCTGATTAATTTGTA
ATAGATAAGTTGTATAACATTTTCATATCTTAAAATGTTTTTTAGATCTATCTTCAAGTG
AAATAATATTTTCAAAATAAAATTCTACAGAAAAGTTCTGCTGCCTATGATATGCACATT
TTTGGGCAAGATATGAACTAGAGCCAAAAAGTATTTGACAGTTTGATTTACTCTGATAAT
ATGCAAGCTTCTTATCATTTAAATCTGTAGATATTTTTAAAAACATAGTCATGATGTAAG
TGATTATTAGTAAATACATCAATGTTAAAATTAGGTATTTGGGTTTTCAATTTAGAGAAT
TCATCATTCATTTTCATTGACGTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGGTTTTAAAGGTACTTCCTCTCATCTTCCCCAAAGAAAATGGTTTTAACTTAATAGTT
TGTCAAAGTTTGTAAATTGTACCCATGGATTTTTGTCAAATTCCAACAATAAGGGTGTAG
AAGAGGGCCAGAAATAGACCTTTACTTTTCATTTGGAAGCATTTGACAGCTTTCTAAACT
TTTCTTCCTGTTTGGGGATTTTTCAATTAATATATTCTATGTATATAAAATATGGTTCAC
TCCTGTAAAATGAAATTGCTGGAATCAATCAAGCCAGTGCACCATTAGAATTATTTATAA
GGAACGATTGTGTTTGACACTAGTAGTCAAGTCTGGACTATATTCTGCAGTTAGCCACTT
TTGTCTTAAAGCATATTTTAAACACTTTGAGGTTGTAATAGAACTAAAACTCACAGTTCA
GTATATTTATATTTTTAAAGTATAATATGACCTCAGCTCAGTGGAGGAATGCTGTATTAT
GCAGGTTTGTGTCAATTTCCTAACATTAAAATGACCTGGTTTTATCAGTTTCTTAAAATT
ATGATCAGTGAGTGGTCTAGCAATTTAAGGCAGTAGTAAGTTATGAGTAAAATGAGGCTC
TGCAGGCATTTAAATGCTCAACTGCTTTCAGTGTCCACTTTATATGATTACTCACTTATG
CCACAATAGATAAATCTTTGAAAATGAATGCTTTTAAATTATAATTTAAAAAGAGCAGGT
GCAGGTCACAGAAAAATTTTAAAGTATGCCTTCTTGCCAGCAATAGTTCATTATAAAGTA
AGCCAGGTTTTTGCCAAGATCAGTGTTTGTTTCTTCAAAACAAAGGTAGAAATAGATTTG
TAATAGTGTGCTCTTGTACCTCTACATGGGTTCTTAATTTTGAGCAGTTATGCATTTATA
TAGAGGAAATAAATCAACTGTGAATAAATGCATGTTTACCAAAATGATTGTTTTACAGTG
CATTTAGTTCTGATATTTATAAAGTTGACATTTCACACAATAACTTTTAAATAGTTTGGA
ATTCTATATAGTTTAGACATCAGTCACATCTGGAGACAAAGAAAAATGTGCAATATTTTT
TATGTAGGTGAGCTAACACAGTGTACCTAATTGCAGAATTAATTATCTGATTAATTTGTA
ATAGATAAGTTGTATAACATTTTCATATCTTAAAATGTTTTTTAGATCTATCTTCAAGTG
AAATAATATTTTCAAAATAAAATTCTACAGAAAAGTTCTGCTGCCTATGATATGCACATT
TTTGGGCAAGATATGAACTAGAGCCAAAAAGTATTTGACAGTTTGATTTACTCTGATAAT
ATGCAAGCTTCTTATCATTTAAATCTGTAGATATTTTTAAAAACATAGTCATGATGTAAG
TGATTATTAGTAAATACATCAATGTTAAAATTAGGTATTTGGGTTTTCAATTTAGAGAAT
TCATCATTCATTTTCATTGACGTG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               544-663, + strand, RNAz p=0.985816

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               544-663, + strand, RNAz p=0.985816

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1457, gnl|bosTau2|chr9 (33688453-33686988)
               

               
               1-1457, gnl|Hg17|chr6 (99954486-99953018)
               

               
               1-1457, gnl|Mm7|chr4 (21878988-21880340)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1457, gnl|bosTau2|chr9 (33688453-33686988)
               

               
               1-1457, gnl|Hg17|chr6 (99954486-99953018)
               

               
               1-1457, gnl|Mm7|chr4 (21878988-21880340)

Expressed library(ies): 15 entry(ies)

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Expressed library(ies): 15 entry(ies)

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               cbr (1.91963)
               

               
               lin (0.582411)
               

               
               sag (0.548145)
               

               
               kid (0.389206)
               

               
               tra (0.369276)
               

               
               fco (0.314416)
               

               
               fce (0.271592)
               

               
               ret (0.257467)
               

               
               cbe (0.239234)
               

               
               ecc (0.23007)
               

               
               fty (0.17584)
               

               
               eye (0.170503)
               

               
               nco (0.161734)
               

               
               lyg (0.133103)
               

               
               nmm (0.132802)

Expressed library(ies): 15 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbr (1.91963)
               

               
               lin (0.582411)
               

               
               sag (0.548145)
               

               
               kid (0.389206)
               

               
               tra (0.369276)
               

               
               fco (0.314416)
               

               
               fce (0.271592)
               

               
               ret (0.257467)
               

               
               cbe (0.239234)
               

               
               ecc (0.23007)
               

               
               fty (0.17584)
               

               
               eye (0.170503)
               

               
               nco (0.161734)
               

               
               lyg (0.133103)
               

               
               nmm (0.132802)

	1-1457, gnl\|bosTau2\|chr9 (33688453-33686988)
	1-1457, gnl\|Hg17\|chr6 (99954486-99953018)
	1-1457, gnl\|Mm7\|chr4 (21878988-21880340)

	cbr (1.91963)
	lin (0.582411)
	sag (0.548145)
	kid (0.389206)
	tra (0.369276)
	fco (0.314416)
	fce (0.271592)
	ret (0.257467)
	cbe (0.239234)
	ecc (0.23007)
	fty (0.17584)
	eye (0.170503)
	nco (0.161734)
	lyg (0.133103)
	nmm (0.132802)