Non-Coding RNA Search

Ss1.1-rlin36_m17.5

Sequence:


               
               GAAAAGCCTTCTCTCAATGCTCATTACTTATTATACATATGAGAAGTCACACTGGTGAGA
AACCCTTTGAATGTAATGAATGTGGGAAAGCCTTCTCTCAAAGAGCATCCCTTTCTATAC
ACAAGAGAGGTCATACAGGTGAGAAACGAAGAGTATACTAAATGAATAAAGGCCTTCTCT
TAAATTCAATGCAATTTTTACTTGACTTTAAAATATCTTGGCATAATCTCCAAAACATGA
ACAAGATCTTTATGAAAAAATTGTAAAGCTTTATCAAAGGCAAAAGACGTGAGTAAATGC
AGAGAAATACCATGGATGTAGATGGAAAAACCCAATATCATAAAATGTCTGTTCTTCCCC
CAAATTAACCTATAGACCTAATACAGTTACAAACATCTAATAGGAATTTTCTAGGATCTT
TACAAAATGGTTCTAAAATTCTTATGAAATAAGTCTATGGATTGCTGAAACAATATTGAA
AAAGAATAGAGCAGACATACCTTCTACCATATACTACACATATTATGAAGTTATGGTCAT
AAAATGGTGTCTGGTATTAGTATATTAATGGGCAAGTAAAAAGGTTTTACAGAATAGAAT
GCCTAGAAGTAAACCAATGAATGTATGCGAACTTGGTGTATATTAGGCACGACATCATGA
ATCAGTAGGAGAATGATGGCCTAGTTAATAAAAATTGTTGGAGTATTTTAATCTCCATAT
TAGGGAAAATAAAACTGTACACAACCTTACAACATATAAAGAAACAGAATTCCAAAAGAT
TTGAACACTGAAATCTCAAAGGCCAAACTGAACTTCTTGGGAGGAAATAGCAGGATATTC
TCTATGACTTTAAAGCAGGGAGACAGTTTTTAAAAAGATCCTGCAGTTCTACTTTTGGAT
ATACTTCCTAAAGAAATTCACAAATATGCATAATAAATAAATATATATATATATCTGGAT
TGAAAACAATCTATATATGGAAGAGGTAATGAATAAAATGTGATACGCTCAAATAATGGA
ATGTTGAAAGTAATGAACTTGATCTATATTGTATAACTTGAGTAGTTATCTAAAATAATG
TTGAGTGAAAAAGTCAAGATCCAGAGGAAACATAGTGTATAACATTCATGTAAATTGGAA
TGAAATCATTCACAAAAAATAGAACTATGTTTTTATTATTGAAATGTGTATGTAGAACTA
TCTTAAGTGCATTAAAATGGACAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAAAAGCCTTCTCTCAATGCTCATTACTTATTATACATATGAGAAGTCACACTGGTGAGA
AACCCTTTGAATGTAATGAATGTGGGAAAGCCTTCTCTCAAAGAGCATCCCTTTCTATAC
ACAAGAGAGGTCATACAGGTGAGAAACGAAGAGTATACTAAATGAATAAAGGCCTTCTCT
TAAATTCAATGCAATTTTTACTTGACTTTAAAATATCTTGGCATAATCTCCAAAACATGA
ACAAGATCTTTATGAAAAAATTGTAAAGCTTTATCAAAGGCAAAAGACGTGAGTAAATGC
AGAGAAATACCATGGATGTAGATGGAAAAACCCAATATCATAAAATGTCTGTTCTTCCCC
CAAATTAACCTATAGACCTAATACAGTTACAAACATCTAATAGGAATTTTCTAGGATCTT
TACAAAATGGTTCTAAAATTCTTATGAAATAAGTCTATGGATTGCTGAAACAATATTGAA
AAAGAATAGAGCAGACATACCTTCTACCATATACTACACATATTATGAAGTTATGGTCAT
AAAATGGTGTCTGGTATTAGTATATTAATGGGCAAGTAAAAAGGTTTTACAGAATAGAAT
GCCTAGAAGTAAACCAATGAATGTATGCGAACTTGGTGTATATTAGGCACGACATCATGA
ATCAGTAGGAGAATGATGGCCTAGTTAATAAAAATTGTTGGAGTATTTTAATCTCCATAT
TAGGGAAAATAAAACTGTACACAACCTTACAACATATAAAGAAACAGAATTCCAAAAGAT
TTGAACACTGAAATCTCAAAGGCCAAACTGAACTTCTTGGGAGGAAATAGCAGGATATTC
TCTATGACTTTAAAGCAGGGAGACAGTTTTTAAAAAGATCCTGCAGTTCTACTTTTGGAT
ATACTTCCTAAAGAAATTCACAAATATGCATAATAAATAAATATATATATATATCTGGAT
TGAAAACAATCTATATATGGAAGAGGTAATGAATAAAATGTGATACGCTCAAATAATGGA
ATGTTGAAAGTAATGAACTTGATCTATATTGTATAACTTGAGTAGTTATCTAAAATAATG
TTGAGTGAAAAAGTCAAGATCCAGAGGAAACATAGTGTATAACATTCATGTAAATTGGAA
TGAAATCATTCACAAAAAATAGAACTATGTTTTTATTATTGAAATGTGTATGTAGAACTA
TCTTAAGTGCATTAAAATGGACAT

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

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               1-177, gnl|bosTau2|chr18 (41198026-41198204)
               

               
               1-177, gnl|Hg17|chr9 (42212951-42213135)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-177, gnl|bosTau2|chr18 (41198026-41198204)
               

               
               1-177, gnl|Hg17|chr9 (42212951-42213135)

Expressed library(ies): 8 entry(ies)

More info

Expressed library(ies): 8 entry(ies)

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               ret (0.3862)
               

               
               aor (0.195274)
               

               
               sag (0.182715)
               

               
               fco (0.157208)
               

               
               lin (0.145603)
               

               
               lnt (0.142308)
               

               
               kid (0.129735)
               

               
               sug (0.127291)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ret (0.3862)
               

               
               aor (0.195274)
               

               
               sag (0.182715)
               

               
               fco (0.157208)
               

               
               lin (0.145603)
               

               
               lnt (0.142308)
               

               
               kid (0.129735)
               

               
               sug (0.127291)

	1-177, gnl\|bosTau2\|chr18 (41198026-41198204)
	1-177, gnl\|Hg17\|chr9 (42212951-42213135)

	ret (0.3862)
	aor (0.195274)
	sag (0.182715)
	fco (0.157208)
	lin (0.145603)
	lnt (0.142308)
	kid (0.129735)
	sug (0.127291)