Ss1.1-rlin37_b4.5.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCTGCCCTCCGTGCTGAATAAATTCCGCATTTATCTGACCCTTTTGAGGTTTCTGGATTA CAGCATATCTGATGAAATAACCAAGGCAGTCGAAGACGACTTTGTGGAAATGCGCAAGAA CGATCCTCAGAGCATCACCGCTGACGACCTCCACCAGTTGCTCATCGTAGCTCGGTTTCT GTCTCTCAGTGCTGGTCAGACAACGCTGTCAAGAGAACGATGGCTAAGAGCAAAGCAGCT AGAATCTTCAAGAAGAGCCAGGCTTCAGCAGCAGAAATGTGTAAATGGAAATGAACTTTA AAGATCTGATGCTTATGAAAGAGTAATGGGCAGGTTGTAGCCACATTATTGTAAAATTCT AATAACATTTATACCACATTATTTTGTAGATAATTTGTATCAAAAATCAATGACTTTTCC TGAAATCACGCCTGGTAACATCTGAAGTTTATATAACATTCAGTAAGGGCTTTTACCTTA CTGATTTTATGGAGCTTTTGAAGTTTGTTTTATAATTATATAAATTAGTAATGGTGTACA AAAATGTATTTGATATTAAAAGTTTAATATTGATAATGTTGCCGATTATACCATTTCCTG AGCTTCAGCTAAGTCATAGGCCAGACTTTGTTGAAATGTTAACGTCAGCTTCATTTGAAG AAAACTGTTGCAATTCCAAAGTCAAAGGAATTGTTGGCTTCAGATTTTTATGTCTTTCCA GTGAACAGTGGGTCTGAATGTGTCCAGTGGTCCACGTTTGGGGAATGGAGCACACTTGCC CTTAATTCGCATAATTTTGTGAAATTCTCTAGTATCATTTCCCAAACATCTGACCACGGC TTTTTTCCATTTAACAGTTTCTAACAACATGCAAAACTAGTCTTTTACATGGCAGTGGTT CCCAGACTTTTGGGTTTCATGGACCAGCAATAGTTGCAAAAATTGTGGGGATTTGACAGG TTTGCCAACTTATTTTGCCAAGTAATCTGAAATCGATCACTGTATTATCACTTTTTTTTT TTTTCCCTTAAAAAGACAATCTCAGACCAAGAGAGAGTTCTCTAAGTGGAATAAATGTAG CTTTTTGAAAAAAACACTACATTGTCCTTATTTTTCTCATTTCACCCCGGTGCATATGTA TGGGAACCACTGTTTTATGGGACTCATTTAAGGGAATGCTGCCTGCACTATGCAGTTGTT TTGCCCAAATAGTTACCTTTTAAAAAATGCCTTCTTTAGGAAAAAAATTGGTTTTTAATT TTCCTAATATCATTTAGTTACTTTGATTACATTGGATTTTGAACTTTTATGTTTATCAGT TTGCTCCAGATGTGTTAGAACAACTAACATCTGCTAGTCCAGGAATAAAAGTAGGTAGGT TTCCCCCAACCAGTTTGTTTTAACATAAGTTTTTAAAGGAACAAAACTATTACCCATAGC TAGAAAGCAAAGTAATAGAGTAGAGTGGTGTAATGGTGACATCAAGAATCTTTAGAGAGG TTAGAACATTACTTTTTTAAGCTATCACTGGTTATATATAAGGTTTAGGTTTTTTTCAGT CAGTAACTTAGTTGGAAGCATTAGCATTTGGTTAAATGATTACTTAAATCCTGCACATGA GCGCTTGCACACACACACCCTGCCCCTGGGCCCAAATTAACATTGCTAACCAAGAAAAGA GAATCAGCCTGCCTTGAAAATGGAGGAATTTATTATGCCTGAACTGAAGTGAAAATTACT AGTTTACCTTTTCTTAAACTCAGATCTATTTTTATAAACTAATGTAAATAATCTGTTTAT ATTTAGAATTCTAACTGGCTTTCATTTTTTATAATTGGTAGATTAGACCTTCCTTAAACT TTTAGAACTAAAACAAAGGCGCACCTGGATTTGTGAGAATTAAAGTCAACAGAGTAGATT AGTTACTGTGTTTATTGTGCCAATGTGAACTGTAATTTACCAAAGAGAAGTACATAATTT GCTTGGTCTTACAGAAAAGTTCCCTTGAAAAGGAAAACCTTTCAAATAAATAAAACTTCC AAATTACTAGTAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCTGCCCTCCGTGCTGAATAAATTCCGCATTTATCTGACCCTTTTGAGGTTTCTGGATTA CAGCATATCTGATGAAATAACCAAGGCAGTCGAAGACGACTTTGTGGAAATGCGCAAGAA CGATCCTCAGAGCATCACCGCTGACGACCTCCACCAGTTGCTCATCGTAGCTCGGTTTCT GTCTCTCAGTGCTGGTCAGACAACGCTGTCAAGAGAACGATGGCTAAGAGCAAAGCAGCT AGAATCTTCAAGAAGAGCCAGGCTTCAGCAGCAGAAATGTGTAAATGGAAATGAACTTTA AAGATCTGATGCTTATGAAAGAGTAATGGGCAGGTTGTAGCCACATTATTGTAAAATTCT AATAACATTTATACCACATTATTTTGTAGATAATTTGTATCAAAAATCAATGACTTTTCC TGAAATCACGCCTGGTAACATCTGAAGTTTATATAACATTCAGTAAGGGCTTTTACCTTA CTGATTTTATGGAGCTTTTGAAGTTTGTTTTATAATTATATAAATTAGTAATGGTGTACA AAAATGTATTTGATATTAAAAGTTTAATATTGATAATGTTGCCGATTATACCATTTCCTG AGCTTCAGCTAAGTCATAGGCCAGACTTTGTTGAAATGTTAACGTCAGCTTCATTTGAAG AAAACTGTTGCAATTCCAAAGTCAAAGGAATTGTTGGCTTCAGATTTTTATGTCTTTCCA GTGAACAGTGGGTCTGAATGTGTCCAGTGGTCCACGTTTGGGGAATGGAGCACACTTGCC CTTAATTCGCATAATTTTGTGAAATTCTCTAGTATCATTTCCCAAACATCTGACCACGGC TTTTTTCCATTTAACAGTTTCTAACAACATGCAAAACTAGTCTTTTACATGGCAGTGGTT CCCAGACTTTTGGGTTTCATGGACCAGCAATAGTTGCAAAAATTGTGGGGATTTGACAGG TTTGCCAACTTATTTTGCCAAGTAATCTGAAATCGATCACTGTATTATCACTTTTTTTTT TTTTCCCTTAAAAAGACAATCTCAGACCAAGAGAGAGTTCTCTAAGTGGAATAAATGTAG CTTTTTGAAAAAAACACTACATTGTCCTTATTTTTCTCATTTCACCCCGGTGCATATGTA TGGGAACCACTGTTTTATGGGACTCATTTAAGGGAATGCTGCCTGCACTATGCAGTTGTT TTGCCCAAATAGTTACCTTTTAAAAAATGCCTTCTTTAGGAAAAAAATTGGTTTTTAATT TTCCTAATATCATTTAGTTACTTTGATTACATTGGATTTTGAACTTTTATGTTTATCAGT TTGCTCCAGATGTGTTAGAACAACTAACATCTGCTAGTCCAGGAATAAAAGTAGGTAGGT TTCCCCCAACCAGTTTGTTTTAACATAAGTTTTTAAAGGAACAAAACTATTACCCATAGC TAGAAAGCAAAGTAATAGAGTAGAGTGGTGTAATGGTGACATCAAGAATCTTTAGAGAGG TTAGAACATTACTTTTTTAAGCTATCACTGGTTATATATAAGGTTTAGGTTTTTTTCAGT CAGTAACTTAGTTGGAAGCATTAGCATTTGGTTAAATGATTACTTAAATCCTGCACATGA GCGCTTGCACACACACACCCTGCCCCTGGGCCCAAATTAACATTGCTAACCAAGAAAAGA GAATCAGCCTGCCTTGAAAATGGAGGAATTTATTATGCCTGAACTGAAGTGAAAATTACT AGTTTACCTTTTCTTAAACTCAGATCTATTTTTATAAACTAATGTAAATAATCTGTTTAT ATTTAGAATTCTAACTGGCTTTCATTTTTTATAATTGGTAGATTAGACCTTCCTTAAACT TTTAGAACTAAAACAAAGGCGCACCTGGATTTGTGAGAATTAAAGTCAACAGAGTAGATT AGTTACTGTGTTTATTGTGCCAATGTGAACTGTAATTTACCAAAGAGAAGTACATAATTT GCTTGGTCTTACAGAAAAGTTCCCTTGAAAAGGAAAACCTTTCAAATAAATAAAACTTCC AAATTACTAGTAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 372-526, - strand, RNAz p=0.938611 | |
| 736-850, - strand, RNAz p=0.914098 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 372-526, - strand, RNAz p=0.938611 | |
| 736-850, - strand, RNAz p=0.914098 |
| Aligned organism(s): 36 entry(ies) | More info |
| Aligned organism(s): 36 entry(ies) | Help | Less info |
| 174-1609, gnl|bosTau2|chr26 (25321404-25322850) | |
| 174-1609, gnl|Hg17|chr10 (121581103-121579724) | |
| 174-1609, gnl|Mm7|chr7 (124795170-124793803) | |
| 1691-2052, gnl|bosTau2|chr26 (25322897-25323268) | |
| 1691-2052, gnl|canFam2|chr28 (32947371-32946772) | |
| 1691-2052, gnl|canFam2|chr28 (32947164-32946781) | |
| 1691-2052, gnl|canFam2|chr28 (32946730-32947594) | |
| 1691-2052, gnl|dasNov1|scaffold_1871 (38966-39550) | |
| 1691-2052, gnl|dasNov1|scaffold_1871 (39132-39541) | |
| 1691-2052, gnl|dasNov1|scaffold_1871 (39607-38827) | |
| 1691-2052, gnl|echTel1|scaffold_324615 (38370-38893) | |
| 1691-2052, gnl|echTel1|scaffold_324615 (38473-38888) | |
| 1691-2052, gnl|echTel1|scaffold_324615 (38942-38195) | |
| 1691-2052, gnl|hg17|chr10 (121579246-121580030) | |
| 1691-2052, gnl|Hg17|chr10 (121579673-121579292) | |
| 1691-2052, gnl|hg17|chr2 (79005710-79006114) | |
| 1691-2052, gnl|hg17|chr8 (65623658-65624252) | |
| 1691-2052, gnl|loxAfr1|scaffold_133284 (3979-3377) | |
| 1691-2052, gnl|loxAfr1|scaffold_133284 (3801-3383) | |
| 1691-2052, gnl|loxAfr1|scaffold_133284 (3324-4186) | |
| 1691-2052, gnl|mm7|chr7 (124793910-124793408) | |
| 1691-2052, gnl|mm7|chr7 (124793800-124793415) | |
| 1691-2052, gnl|mm7|chr7 (124793378-124794204) | |
| 1691-2052, gnl|Mm7|chr7 (124793772-124793405) | |
| 1691-2052, gnl|oryCun1|scaffold_210370 (104930-104369) | |
| 1691-2052, gnl|oryCun1|scaffold_210370 (104765-104378) | |
| 1691-2052, gnl|oryCun1|scaffold_210370 (104327-105116) | |
| 1691-2052, gnl|panTro1|chr12 (81816036-81816440) | |
| 1691-2052, gnl|panTro1|chr7 (67628201-67628795) | |
| 1691-2052, gnl|panTro1|chr8 (123839997-123840782) | |
| 1691-2052, gnl|rheMac2|chr13 (79255280-79255753) | |
| 1691-2052, gnl|rheMac2|chr8 (67138649-67139241) | |
| 1691-2052, gnl|rheMac2|chr9 (119456482-119457266) | |
| 1691-2052, gnl|rn3|chr1 (188098989-188098441) | |
| 1691-2052, gnl|rn3|chr1 (188098831-188098451) | |
| 1691-2052, gnl|rn3|chr1 (188098412-188099172) |
| Aligned organism(s): 36 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 174-1609, gnl|bosTau2|chr26 (25321404-25322850) | |
| 174-1609, gnl|Hg17|chr10 (121581103-121579724) | |
| 174-1609, gnl|Mm7|chr7 (124795170-124793803) | |
| 1691-2052, gnl|bosTau2|chr26 (25322897-25323268) | |
| 1691-2052, gnl|canFam2|chr28 (32947371-32946772) | |
| 1691-2052, gnl|canFam2|chr28 (32947164-32946781) | |
| 1691-2052, gnl|canFam2|chr28 (32946730-32947594) | |
| 1691-2052, gnl|dasNov1|scaffold_1871 (38966-39550) | |
| 1691-2052, gnl|dasNov1|scaffold_1871 (39132-39541) | |
| 1691-2052, gnl|dasNov1|scaffold_1871 (39607-38827) | |
| 1691-2052, gnl|echTel1|scaffold_324615 (38370-38893) | |
| 1691-2052, gnl|echTel1|scaffold_324615 (38473-38888) | |
| 1691-2052, gnl|echTel1|scaffold_324615 (38942-38195) | |
| 1691-2052, gnl|hg17|chr10 (121579246-121580030) | |
| 1691-2052, gnl|Hg17|chr10 (121579673-121579292) | |
| 1691-2052, gnl|hg17|chr2 (79005710-79006114) | |
| 1691-2052, gnl|hg17|chr8 (65623658-65624252) | |
| 1691-2052, gnl|loxAfr1|scaffold_133284 (3979-3377) | |
| 1691-2052, gnl|loxAfr1|scaffold_133284 (3801-3383) | |
| 1691-2052, gnl|loxAfr1|scaffold_133284 (3324-4186) | |
| 1691-2052, gnl|mm7|chr7 (124793910-124793408) | |
| 1691-2052, gnl|mm7|chr7 (124793800-124793415) | |
| 1691-2052, gnl|mm7|chr7 (124793378-124794204) | |
| 1691-2052, gnl|Mm7|chr7 (124793772-124793405) | |
| 1691-2052, gnl|oryCun1|scaffold_210370 (104930-104369) | |
| 1691-2052, gnl|oryCun1|scaffold_210370 (104765-104378) | |
| 1691-2052, gnl|oryCun1|scaffold_210370 (104327-105116) | |
| 1691-2052, gnl|panTro1|chr12 (81816036-81816440) | |
| 1691-2052, gnl|panTro1|chr7 (67628201-67628795) | |
| 1691-2052, gnl|panTro1|chr8 (123839997-123840782) | |
| 1691-2052, gnl|rheMac2|chr13 (79255280-79255753) | |
| 1691-2052, gnl|rheMac2|chr8 (67138649-67139241) | |
| 1691-2052, gnl|rheMac2|chr9 (119456482-119457266) | |
| 1691-2052, gnl|rn3|chr1 (188098989-188098441) | |
| 1691-2052, gnl|rn3|chr1 (188098831-188098451) | |
| 1691-2052, gnl|rn3|chr1 (188098412-188099172) |
| Expressed library(ies): 26 entry(ies) | More info |
| Expressed library(ies): 26 entry(ies) | Help | Less info |
| liv (1.46284) | |
| lin (0.728014) | |
| gul (0.355177) | |
| rec (0.346141) | |
| fco (0.314416) | |
| kid (0.259471) | |
| ova (0.258264) | |
| ret (0.257467) | |
| jca (0.22792) | |
| spc (0.226732) | |
| cty (0.20816) | |
| aor (0.195274) | |
| nep (0.183925) | |
| mgm (0.180343) | |
| fty (0.17584) | |
| duo (0.172801) | |
| eye (0.170503) | |
| csp (0.161186) | |
| lun (0.150489) | |
| fat (0.147427) | |
| lnt (0.142308) | |
| lyg (0.133103) | |
| sug (0.127291) | |
| thg (0.126791) | |
| clu (0.119646) | |
| cbl (0.114797) |
| Expressed library(ies): 26 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| liv (1.46284) | |
| lin (0.728014) | |
| gul (0.355177) | |
| rec (0.346141) | |
| fco (0.314416) | |
| kid (0.259471) | |
| ova (0.258264) | |
| ret (0.257467) | |
| jca (0.22792) | |
| spc (0.226732) | |
| cty (0.20816) | |
| aor (0.195274) | |
| nep (0.183925) | |
| mgm (0.180343) | |
| fty (0.17584) | |
| duo (0.172801) | |
| eye (0.170503) | |
| csp (0.161186) | |
| lun (0.150489) | |
| fat (0.147427) | |
| lnt (0.142308) | |
| lyg (0.133103) | |
| sug (0.127291) | |
| thg (0.126791) | |
| clu (0.119646) | |
| cbl (0.114797) |