Non-Coding RNA Search

Ss1.1-rlin37_h8.5

Sequence:


               
               AGAAGCCGAGGGGCACAGAAGGCTTATCAGCGAGCGAATCGCTCATGTTGAAATCTGATG
CTGCAAAGTTGAGGTCAGATTCTCATAGTAGGTCATTGTCCCCCAACCATAACACCTGCA
GACACTAAAATCTGATGGGCGGATGTCTTCTAGCTTCAGAGCTGAATCCCCAGGACCAGG
TTCTCGGTCATCATCCCCTAAGCCAAAGACTCTCCCAGCCAGTAGGTCTAGCCCATCTGG
CGCCAGTTCTCCGCGCTCCTCCTCACCGCATGATAAAAATCTACCTCAGAAAAGCGCTGC
TCCCGTGAAGACGAAACTCGACCCTCCTCGGGAACGCTCCAAATCAGACTCTTACACCCT
TGATCCAGACACCCTCAGAAAAGCGCTGCTCCCGTGAAGACGAAACTCGACCCTCCTCGG
GAACGCTCCAAATCAGACTCTTACACCCTTGATCCAGACACCCTCCGCAAGAAGAAGATG
CCCCTCACTGAACCATTAAGGGGACGGTCAACATCGCCAAAACCAAAACCAGTACCAAAG
GATTCTAAAGAGTCCCCCGGATCTGAAAATAGAGCGCCTTCTCCCCACGTGGTGCAGGAA
AACCTCCACAGTGAGGTGGTCGAAGTCTGCACTTCCAGTACTTTAAAAACAAATAGTGTC
ACAGACAGCACCTGTGATGAAAGCAGTGAGTTTAAGAGCGTGGATGAAGGTTCAAATAAA
GTGCATTTCAGTATAGGAAAAGCACCACTGAAAGATGAACAGGAAATGAGAGCATCCCCC
AAAATAAGTCGAAAATGTGCTAATAGGCACACCAGGCCCAAGAAGGAAAAATCTAGCTTT
CTCTTCAAAGGAGATGGATCCAAACCTTTAGAGCCCGCCAAGCAAGCCATGTCTCCTTCC
GTGGCTGAGTGTGCCAGGGCGGTCTTTGCCTCTTTCCTGTGGCACGAGGGCATAGTGCAT
GACGCCATGGCTTGTTCCTCCTTCTTAAAATTTAACCCTGAGCTTTCCAAAGAGCATGCC
CCCATAAGAAGTAGTTTAAACAGCCAGCAGCCTACCGAGGAAAAGGAAACCAAATTGAAA
AATAGACACTCATTGGAAATATCATCTGCGCTGAATATGTTTAATATTGCACCTCATGGA
CCAGATATATCTAAAATGGGTAGTATCAACAAAAATAAGGTATTGTCTATGCTTAAGGAA
CCTCCTCTGCATGAAAAGTGTGAAGATGGGAAAACTGAGGCCACTTTCGAAATGTCCGTG
CATCACCCAATGAAGTCTAAATCTCCTCTTCCCTTAACTCTGCAGCATTTAGTGGCTTTT
TGGGAAGACATCTCTTTGGCTACTATCAAAGCAGCTTCCCAGAATATGATTTTTCCAAGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGAAGCCGAGGGGCACAGAAGGCTTATCAGCGAGCGAATCGCTCATGTTGAAATCTGATG
CTGCAAAGTTGAGGTCAGATTCTCATAGTAGGTCATTGTCCCCCAACCATAACACCTGCA
GACACTAAAATCTGATGGGCGGATGTCTTCTAGCTTCAGAGCTGAATCCCCAGGACCAGG
TTCTCGGTCATCATCCCCTAAGCCAAAGACTCTCCCAGCCAGTAGGTCTAGCCCATCTGG
CGCCAGTTCTCCGCGCTCCTCCTCACCGCATGATAAAAATCTACCTCAGAAAAGCGCTGC
TCCCGTGAAGACGAAACTCGACCCTCCTCGGGAACGCTCCAAATCAGACTCTTACACCCT
TGATCCAGACACCCTCAGAAAAGCGCTGCTCCCGTGAAGACGAAACTCGACCCTCCTCGG
GAACGCTCCAAATCAGACTCTTACACCCTTGATCCAGACACCCTCCGCAAGAAGAAGATG
CCCCTCACTGAACCATTAAGGGGACGGTCAACATCGCCAAAACCAAAACCAGTACCAAAG
GATTCTAAAGAGTCCCCCGGATCTGAAAATAGAGCGCCTTCTCCCCACGTGGTGCAGGAA
AACCTCCACAGTGAGGTGGTCGAAGTCTGCACTTCCAGTACTTTAAAAACAAATAGTGTC
ACAGACAGCACCTGTGATGAAAGCAGTGAGTTTAAGAGCGTGGATGAAGGTTCAAATAAA
GTGCATTTCAGTATAGGAAAAGCACCACTGAAAGATGAACAGGAAATGAGAGCATCCCCC
AAAATAAGTCGAAAATGTGCTAATAGGCACACCAGGCCCAAGAAGGAAAAATCTAGCTTT
CTCTTCAAAGGAGATGGATCCAAACCTTTAGAGCCCGCCAAGCAAGCCATGTCTCCTTCC
GTGGCTGAGTGTGCCAGGGCGGTCTTTGCCTCTTTCCTGTGGCACGAGGGCATAGTGCAT
GACGCCATGGCTTGTTCCTCCTTCTTAAAATTTAACCCTGAGCTTTCCAAAGAGCATGCC
CCCATAAGAAGTAGTTTAAACAGCCAGCAGCCTACCGAGGAAAAGGAAACCAAATTGAAA
AATAGACACTCATTGGAAATATCATCTGCGCTGAATATGTTTAATATTGCACCTCATGGA
CCAGATATATCTAAAATGGGTAGTATCAACAAAAATAAGGTATTGTCTATGCTTAAGGAA
CCTCCTCTGCATGAAAAGTGTGAAGATGGGAAAACTGAGGCCACTTTCGAAATGTCCGTG
CATCACCCAATGAAGTCTAAATCTCCTCTTCCCTTAACTCTGCAGCATTTAGTGGCTTTT
TGGGAAGACATCTCTTTGGCTACTATCAAAGCAGCTTCCCAGAATATGATTTTTCCAAGC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|7512886|pir||T14792

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|7512886|pir||T14792

Predicted RNA structure(s): 4 entry(ies)

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Predicted RNA structure(s): 4 entry(ies)

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               452-651, - strand, RNAz p=0.868006
               

               
               668-779, - strand, RNAz p=0.59124
               

               
               1200-1309, + strand, RNAz p=0.842559
               

               
               1262-1379, + strand, RNAz p=0.779849

Predicted RNA structure(s): 4 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               452-651, - strand, RNAz p=0.868006
               

               
               668-779, - strand, RNAz p=0.59124
               

               
               1200-1309, + strand, RNAz p=0.842559
               

               
               1262-1379, + strand, RNAz p=0.779849

Aligned organism(s): 17 entry(ies)

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Aligned organism(s): 17 entry(ies)

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               373-1379, gnl|bosTau2|chr12 (26120776-26121782)
               

               
               373-1379, gnl|canFam2|chr22 (33611001-33612441)
               

               
               373-1379, gnl|danRer3|chr7 (47426725-47428135)
               

               
               373-1379, gnl|echTel1|scaffold_318022 (138241-139681)
               

               
               373-1379, gnl|fr1|chrUn (155228972-155230402)
               

               
               373-1379, gnl|galGal2|chr1 (151113516-151112079)
               

               
               373-1379, gnl|hg17|chr13 (76569712-76571152)
               

               
               373-1379, gnl|Hg17|chr13 (76570739-76569733)
               

               
               373-1379, gnl|loxAfr1|scaffold_23388 (9618-8178)
               

               
               373-1379, gnl|mm7|chr14 (97587807-97589247)
               

               
               373-1379, gnl|Mm7|chr14 (97588834-97587828)
               

               
               373-1379, gnl|monDom2|scaffold_8 (14705569-14707018)
               

               
               373-1379, gnl|panTro1|chr14 (59146060-59147500)
               

               
               373-1379, gnl|rheMac2|chr17 (57586606-57588046)
               

               
               373-1379, gnl|rn3|chr15 (87187078-87188518)
               

               
               373-1379, gnl|tetNig1|chr2 (8193186-8194619)
               

               
               373-1379, gnl|xenTro1|scaffold_141 (1857831-1856388)

Aligned organism(s): 17 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               373-1379, gnl|bosTau2|chr12 (26120776-26121782)
               

               
               373-1379, gnl|canFam2|chr22 (33611001-33612441)
               

               
               373-1379, gnl|danRer3|chr7 (47426725-47428135)
               

               
               373-1379, gnl|echTel1|scaffold_318022 (138241-139681)
               

               
               373-1379, gnl|fr1|chrUn (155228972-155230402)
               

               
               373-1379, gnl|galGal2|chr1 (151113516-151112079)
               

               
               373-1379, gnl|hg17|chr13 (76569712-76571152)
               

               
               373-1379, gnl|Hg17|chr13 (76570739-76569733)
               

               
               373-1379, gnl|loxAfr1|scaffold_23388 (9618-8178)
               

               
               373-1379, gnl|mm7|chr14 (97587807-97589247)
               

               
               373-1379, gnl|Mm7|chr14 (97588834-97587828)
               

               
               373-1379, gnl|monDom2|scaffold_8 (14705569-14707018)
               

               
               373-1379, gnl|panTro1|chr14 (59146060-59147500)
               

               
               373-1379, gnl|rheMac2|chr17 (57586606-57588046)
               

               
               373-1379, gnl|rn3|chr15 (87187078-87188518)
               

               
               373-1379, gnl|tetNig1|chr2 (8193186-8194619)
               

               
               373-1379, gnl|xenTro1|scaffold_141 (1857831-1856388)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               lin (0.145603)
               

               
               spl (0.143184)
               

               
               nmm (0.132802)
               

               
               thg (0.126791)
               

               
               eep (0.122564)

Expressed library(ies): 5 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lin (0.145603)
               

               
               spl (0.143184)
               

               
               nmm (0.132802)
               

               
               thg (0.126791)
               

               
               eep (0.122564)

	452-651, - strand, RNAz p=0.868006
	668-779, - strand, RNAz p=0.59124
	1200-1309, + strand, RNAz p=0.842559
	1262-1379, + strand, RNAz p=0.779849

	373-1379, gnl\|bosTau2\|chr12 (26120776-26121782)
	373-1379, gnl\|canFam2\|chr22 (33611001-33612441)
	373-1379, gnl\|danRer3\|chr7 (47426725-47428135)
	373-1379, gnl\|echTel1\|scaffold_318022 (138241-139681)
	373-1379, gnl\|fr1\|chrUn (155228972-155230402)
	373-1379, gnl\|galGal2\|chr1 (151113516-151112079)
	373-1379, gnl\|hg17\|chr13 (76569712-76571152)
	373-1379, gnl\|Hg17\|chr13 (76570739-76569733)
	373-1379, gnl\|loxAfr1\|scaffold_23388 (9618-8178)
	373-1379, gnl\|mm7\|chr14 (97587807-97589247)
	373-1379, gnl\|Mm7\|chr14 (97588834-97587828)
	373-1379, gnl\|monDom2\|scaffold_8 (14705569-14707018)
	373-1379, gnl\|panTro1\|chr14 (59146060-59147500)
	373-1379, gnl\|rheMac2\|chr17 (57586606-57588046)
	373-1379, gnl\|rn3\|chr15 (87187078-87188518)
	373-1379, gnl\|tetNig1\|chr2 (8193186-8194619)
	373-1379, gnl\|xenTro1\|scaffold_141 (1857831-1856388)

	lin (0.145603)
	spl (0.143184)
	nmm (0.132802)
	thg (0.126791)
	eep (0.122564)