Non-Coding RNA Search

Ss1.1-rlin37_j14.5

Sequence:


               
               ATATGACAATTTGAAATGAATTATGGGTCTTTGATGAAATATGGTTTAACGAACAAAACC
GTTTACATGATGACAAATGGAAGTTTTTTTAAAATTAGATTTTCAGTGCCTGCACTTCTC
ATTCAGTAAACTAAGTCAATAGCTATTTTTGTTTGTAGCCTGTAAGTATACTATCAACCC
TGTCACTTGCACCCATCACACAAAAATCTAAAATGATGTCTAATATTCATGAAATCTGAC
GCACATGGGGTGAATCCAATTTTAATATTTTTGAGAAAAGTCCTGCTCATTTGCACTATT
CTATATAGTAACTGCAATTTTGTTGCCCTATATGTACAATTAGACCTTTTAATTAAAAAT
ATACCTTTTATTATGTAATCATGTTCTGCTATGTCTCATTCCTCAGCCTTATTTTATGAA
GTGGAAGAAGAGTCATTAAACTATGTTATCACAAACTAAGTTTTGTGTGCTGTTTGTGAA
AAACATGTATTTCTGAAATCAGTCTGCTAATATGATTCTGCAGTATTAGCTTGCTTTTGC
TGCTGTGTTAATGTGATATATTTGCTCACCATTTGGGTTTAATCATCTACATAATTGTGA
AATTTAACAGACTATAATAAAGCATGATGACCAAAGTTTTAGAAAACATTTAGACATTTT
AAATGCACGTTTAAGGAAACGTGTCGAATGTAACTTCCCTATTTTTGTGTGCAAAACACT
AAATTTTATTTCTGTATGTCCTGACATTATAAAGGTGTTATTTTGCTGCCCAGTTGTGTA
ATTCTCAAATATAGTGCCAGGTATTCTATAGCTTTTCTCAGAATTCTTGGGCTATAAGTA
CTGTATGCATCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATATGACAATTTGAAATGAATTATGGGTCTTTGATGAAATATGGTTTAACGAACAAAACC
GTTTACATGATGACAAATGGAAGTTTTTTTAAAATTAGATTTTCAGTGCCTGCACTTCTC
ATTCAGTAAACTAAGTCAATAGCTATTTTTGTTTGTAGCCTGTAAGTATACTATCAACCC
TGTCACTTGCACCCATCACACAAAAATCTAAAATGATGTCTAATATTCATGAAATCTGAC
GCACATGGGGTGAATCCAATTTTAATATTTTTGAGAAAAGTCCTGCTCATTTGCACTATT
CTATATAGTAACTGCAATTTTGTTGCCCTATATGTACAATTAGACCTTTTAATTAAAAAT
ATACCTTTTATTATGTAATCATGTTCTGCTATGTCTCATTCCTCAGCCTTATTTTATGAA
GTGGAAGAAGAGTCATTAAACTATGTTATCACAAACTAAGTTTTGTGTGCTGTTTGTGAA
AAACATGTATTTCTGAAATCAGTCTGCTAATATGATTCTGCAGTATTAGCTTGCTTTTGC
TGCTGTGTTAATGTGATATATTTGCTCACCATTTGGGTTTAATCATCTACATAATTGTGA
AATTTAACAGACTATAATAAAGCATGATGACCAAAGTTTTAGAAAACATTTAGACATTTT
AAATGCACGTTTAAGGAAACGTGTCGAATGTAACTTCCCTATTTTTGTGTGCAAAACACT
AAATTTTATTTCTGTATGTCCTGACATTATAAAGGTGTTATTTTGCTGCCCAGTTGTGTA
ATTCTCAAATATAGTGCCAGGTATTCTATAGCTTTTCTCAGAATTCTTGGGCTATAAGTA
CTGTATGCATCT

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               414-533, - strand, RNAz p=0.743649
               

               
               574-693, - strand, RNAz p=0.684611

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               414-533, - strand, RNAz p=0.743649
               

               
               574-693, - strand, RNAz p=0.684611

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-852, gnl|bosTau2|chr21 (37177896-37178746)
               

               
               1-852, gnl|Hg17|chr14 (44612489-44613338)
               

               
               1-852, gnl|Mm7|chr12 (62960770-62961618)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-852, gnl|bosTau2|chr21 (37177896-37178746)
               

               
               1-852, gnl|Hg17|chr14 (44612489-44613338)
               

               
               1-852, gnl|Mm7|chr12 (62960770-62961618)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               ret (0.3862)
               

               
               fco (0.157208)
               

               
               lin (0.145603)
               

               
               spl (0.143184)
               

               
               clu (0.119646)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ret (0.3862)
               

               
               fco (0.157208)
               

               
               lin (0.145603)
               

               
               spl (0.143184)
               

               
               clu (0.119646)

	414-533, - strand, RNAz p=0.743649
	574-693, - strand, RNAz p=0.684611

	1-852, gnl\|bosTau2\|chr21 (37177896-37178746)
	1-852, gnl\|Hg17\|chr14 (44612489-44613338)
	1-852, gnl\|Mm7\|chr12 (62960770-62961618)

	ret (0.3862)
	fco (0.157208)
	lin (0.145603)
	spl (0.143184)
	clu (0.119646)