Non-Coding RNA Search

Ss1.1-rlin37_p18.5

Sequence:


               
               CCATCTATAATGTACAATGTAGCAGAATTAAATTCAGTCAACCAAGATGGAGAATGTGTA
ACTACCTTTGGGTCAAGAGCATATTTGCAGCCAATGGATACACGCCAGTACTTGTACTGC
CTAAAACCCAAGAAGGAGTTTGCAGAAAAAGCAGGCATCATTAAGGGAGTAACAGTAATT
GGAAAACTGGATATAGTATGGAAAACAAATCTAGGTGAAAGGGGAAGATTACAGACCAGC
CAGCTGCAAAGAATGGCTCCAGGTTATGGAGATGTTAGATTGTCTTTGGAGACAATCCCA
GATACCGTTAACCTAGAAGAACCATTTCATATTACTTGTAAAATAACATGCAGCAGTGAA
AGGACGATGGATCTCGTTTTGGAAATGTGCAATACCAACTCTATCCACTGGTGTGGTATT
TCAGGAAGACAGCTTGGAAAGCTCCATCCAAGTTCTTCTCTCTGCCTTGCCCTTACTCTG
CTGTCTTCAGTACAGGGACTGCAAAGCGTCTCCGGCTTAAGACTAACAGACACGTTCTTA
AAGAGAACATATGAATATGATGACATTGCACAAGTCTGTGTGGTATCTTCAGTCATTAAA
GTGGAAAGCTGAAGAAAATTTCTAAAATTATGCTTTTCATCGACTTTCCCAGAACTTTTC
TGTATTTTTGTCACCTTTGTAAAATGATCAAATCAACAGTAAGAATAATTCTATATTATT
TAAATTTCTTTCCTGTAAAACATTTAAAATATTAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCATCTATAATGTACAATGTAGCAGAATTAAATTCAGTCAACCAAGATGGAGAATGTGTA
ACTACCTTTGGGTCAAGAGCATATTTGCAGCCAATGGATACACGCCAGTACTTGTACTGC
CTAAAACCCAAGAAGGAGTTTGCAGAAAAAGCAGGCATCATTAAGGGAGTAACAGTAATT
GGAAAACTGGATATAGTATGGAAAACAAATCTAGGTGAAAGGGGAAGATTACAGACCAGC
CAGCTGCAAAGAATGGCTCCAGGTTATGGAGATGTTAGATTGTCTTTGGAGACAATCCCA
GATACCGTTAACCTAGAAGAACCATTTCATATTACTTGTAAAATAACATGCAGCAGTGAA
AGGACGATGGATCTCGTTTTGGAAATGTGCAATACCAACTCTATCCACTGGTGTGGTATT
TCAGGAAGACAGCTTGGAAAGCTCCATCCAAGTTCTTCTCTCTGCCTTGCCCTTACTCTG
CTGTCTTCAGTACAGGGACTGCAAAGCGTCTCCGGCTTAAGACTAACAGACACGTTCTTA
AAGAGAACATATGAATATGATGACATTGCACAAGTCTGTGTGGTATCTTCAGTCATTAAA
GTGGAAAGCTGAAGAAAATTTCTAAAATTATGCTTTTCATCGACTTTCCCAGAACTTTTC
TGTATTTTTGTCACCTTTGTAAAATGATCAAATCAACAGTAAGAATAATTCTATATTATT
TAAATTTCTTTCCTGTAAAACATTTAAAATATTAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               Q8TCM2_HUMAN

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               Q8TCM2_HUMAN

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               351-504, + strand, RNAz p=0.935085

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               351-504, + strand, RNAz p=0.935085

Homologous human UTR: 1 entry(ies)

More info

Homologous human UTR: 1 entry(ies)

Help | Less info


               
               3' of BX641157, +

Homologous human UTR: 1 entry(ies)

Help | Less info

Human gene identifier and UTR site,
human gene reading direction


               
               3' of BX641157, +

Aligned organism(s): 9 entry(ies)

More info

Aligned organism(s): 9 entry(ies)

Help | Less info


               
               56-256, gnl|bosTau2|chr20 (8775509-8775309)
               

               
               56-256, gnl|Hg17|chr5 (64992281-64992481)
               

               
               56-256, gnl|Mm7|chr13 (101285992-101285792)
               


               
               351-504, gnl|bosTau2|chr20 (8770622-8770469)
               

               
               351-504, gnl|Hg17|chr5 (64995814-64995967)
               

               
               351-504, gnl|Mm7|chr13 (101282266-101282113)
               


               
               505-756, gnl|bosTau2|chr20 (8770343-8770102)
               

               
               505-756, gnl|Hg17|chr5 (64996087-64996332)
               

               
               505-756, gnl|Mm7|chr13 (101281954-101281712)

Aligned organism(s): 9 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               56-256, gnl|bosTau2|chr20 (8775509-8775309)
               

               
               56-256, gnl|Hg17|chr5 (64992281-64992481)
               

               
               56-256, gnl|Mm7|chr13 (101285992-101285792)
               


               
               351-504, gnl|bosTau2|chr20 (8770622-8770469)
               

               
               351-504, gnl|Hg17|chr5 (64995814-64995967)
               

               
               351-504, gnl|Mm7|chr13 (101282266-101282113)
               


               
               505-756, gnl|bosTau2|chr20 (8770343-8770102)
               

               
               505-756, gnl|Hg17|chr5 (64996087-64996332)
               

               
               505-756, gnl|Mm7|chr13 (101281954-101281712)

Expressed library(ies): 12 entry(ies)

More info

Expressed library(ies): 12 entry(ies)

Help | Less info


               
               vin (0.332557)
               

               
               cte (0.29274)
               

               
               ste (0.270416)
               

               
               gul (0.177588)
               

               
               nje (0.16592)
               

               
               mga (0.160205)
               

               
               lin (0.145603)
               

               
               lnt (0.142308)
               

               
               csk (0.140746)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               nbm (0.0993246)

Expressed library(ies): 12 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               vin (0.332557)
               

               
               cte (0.29274)
               

               
               ste (0.270416)
               

               
               gul (0.177588)
               

               
               nje (0.16592)
               

               
               mga (0.160205)
               

               
               lin (0.145603)
               

               
               lnt (0.142308)
               

               
               csk (0.140746)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               nbm (0.0993246)

	56-256, gnl\|bosTau2\|chr20 (8775509-8775309)
	56-256, gnl\|Hg17\|chr5 (64992281-64992481)
	56-256, gnl\|Mm7\|chr13 (101285992-101285792)

	351-504, gnl\|bosTau2\|chr20 (8770622-8770469)
	351-504, gnl\|Hg17\|chr5 (64995814-64995967)
	351-504, gnl\|Mm7\|chr13 (101282266-101282113)

	505-756, gnl\|bosTau2\|chr20 (8770343-8770102)
	505-756, gnl\|Hg17\|chr5 (64996087-64996332)
	505-756, gnl\|Mm7\|chr13 (101281954-101281712)

	vin (0.332557)
	cte (0.29274)
	ste (0.270416)
	gul (0.177588)
	nje (0.16592)
	mga (0.160205)
	lin (0.145603)
	lnt (0.142308)
	csk (0.140746)
	ova (0.129132)
	sug (0.127291)
	nbm (0.0993246)