Non-Coding RNA Search

Ss1.1-rlin38_f7.5

Sequence:


               
               TTGCTGGAGTGAGAGCACAAAATAGAAAGGAAGCATATCTGTATAGGCCGGCTCAGAAAG
AACCAGAATATAGTTCTCATAGAAAGAAGAATGCAACTACACCAGGAATAGATGGTGGTA
GTGTATTAATTCCTTAGCCACATGTAGACTTTTATTAGGTCACTTATAACTAGGGTGAGA
TATAATTTATATTCCAAACTGGGTCACTTTTGAGAGTGAAAGTATGTGCTACCTGAATGA
GACACTGGGACAACAGGTGTAAACGAGAACTGTTCCAGTAAAAACCGGGACACTTCATTA
CCCCCCTGCTAATAATATACTTTTCTCCAGACTTAGTCCCAGTTCTTGAACCTCTCCACA
GGACTTGTTCTCCTTTAAAGAACTCTGATGTACATTTGCAGTCTTTCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTGCTGGAGTGAGAGCACAAAATAGAAAGGAAGCATATCTGTATAGGCCGGCTCAGAAAG
AACCAGAATATAGTTCTCATAGAAAGAAGAATGCAACTACACCAGGAATAGATGGTGGTA
GTGTATTAATTCCTTAGCCACATGTAGACTTTTATTAGGTCACTTATAACTAGGGTGAGA
TATAATTTATATTCCAAACTGGGTCACTTTTGAGAGTGAAAGTATGTGCTACCTGAATGA
GACACTGGGACAACAGGTGTAAACGAGAACTGTTCCAGTAAAAACCGGGACACTTCATTA
CCCCCCTGCTAATAATATACTTTTCTCCAGACTTAGTCCCAGTTCTTGAACCTCTCCACA
GGACTTGTTCTCCTTTAAAGAACTCTGATGTACATTTGCAGTCTTTCA

Aligned organism(s): 12 entry(ies)

More info

Aligned organism(s): 12 entry(ies)

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               1-401, gnl|bosTau2|chr29 (5075825-5075430)
               

               
               1-401, gnl|canFam2|chr21 (16458991-16458721)
               

               
               1-401, gnl|dasNov1|scaffold_10670 (7629-7366)
               

               
               1-401, gnl|echTel1|scaffold_324320 (302533-302304)
               

               
               1-401, gnl|hg17|chr11 (85431553-85431859)
               

               
               1-401, gnl|Hg17|chr11 (85432071-85431555)
               

               
               1-401, gnl|loxAfr1|scaffold_2975 (94866-95135)
               

               
               1-401, gnl|mm7|chr7 (86097982-86097758)
               

               
               1-401, gnl|Mm7|chr7 (86097623-86097978)
               

               
               1-401, gnl|panTro1|chr9 (87080699-87081005)
               

               
               1-401, gnl|rheMac2|chr14 (84374109-84374386)
               

               
               1-401, gnl|rn3|chr1 (146851521-146851298)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-401, gnl|bosTau2|chr29 (5075825-5075430)
               

               
               1-401, gnl|canFam2|chr21 (16458991-16458721)
               

               
               1-401, gnl|dasNov1|scaffold_10670 (7629-7366)
               

               
               1-401, gnl|echTel1|scaffold_324320 (302533-302304)
               

               
               1-401, gnl|hg17|chr11 (85431553-85431859)
               

               
               1-401, gnl|Hg17|chr11 (85432071-85431555)
               

               
               1-401, gnl|loxAfr1|scaffold_2975 (94866-95135)
               

               
               1-401, gnl|mm7|chr7 (86097982-86097758)
               

               
               1-401, gnl|Mm7|chr7 (86097623-86097978)
               

               
               1-401, gnl|panTro1|chr9 (87080699-87081005)
               

               
               1-401, gnl|rheMac2|chr14 (84374109-84374386)
               

               
               1-401, gnl|rn3|chr1 (146851521-146851298)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               lin (0.291206)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lin (0.291206)

	1-401, gnl\|bosTau2\|chr29 (5075825-5075430)
	1-401, gnl\|canFam2\|chr21 (16458991-16458721)
	1-401, gnl\|dasNov1\|scaffold_10670 (7629-7366)
	1-401, gnl\|echTel1\|scaffold_324320 (302533-302304)
	1-401, gnl\|hg17\|chr11 (85431553-85431859)
	1-401, gnl\|Hg17\|chr11 (85432071-85431555)
	1-401, gnl\|loxAfr1\|scaffold_2975 (94866-95135)
	1-401, gnl\|mm7\|chr7 (86097982-86097758)
	1-401, gnl\|Mm7\|chr7 (86097623-86097978)
	1-401, gnl\|panTro1\|chr9 (87080699-87081005)
	1-401, gnl\|rheMac2\|chr14 (84374109-84374386)
	1-401, gnl\|rn3\|chr1 (146851521-146851298)