Non-Coding RNA Search

Ss1.1-rlin38_j1.5

Sequence:


               
               CAATTTGTACAAACACAATCCCTACCCATGACGGAGACCACAGTGTTCCCTTCCATCGTC
CGCAGGCTGTCAATGGAATTTCCTGGTACAAAACAAACAACTTAGTTCTTGATTACTGCA
CTAGTTTGGTGGCAAGTGATTGTTTCTTGGTGTTTGACGATGGTAGGCAGATCCCATATA
AGAACTATCGACAGGCGGGAGGGGACTACGCCACGTGGAGCATCACCCCAGACACATCCG
CCCAGCCATACTGGAAATGGTTTGTCTGCCACTTCAGATCAAAACTTGAAGAAAAATATC
AAAAGAGATTTATAGATAAAGGTAAAATTCCTGATGCATGGGAAAAAATCACAAAACAGA
ATGTGCTTGATGACTTGAAATAAAACTAATACTCAACACCCAAAAGAGAGCCCCGGGATC
TGAATAAAAGAGGCACCTTAACTGACCAAGGCGAAAATACCACCTCCTCATCATGAAAAC
CTTCATTGTACCTATTTTTCAAATGAAACATCTGAAACTAAATCAATTAACAAGAAGAAG
TTGAAGATTTGCTCTGAAAGGATTTCATTTCCTTTGTCTCAATTCCTTCTGGTTTAAAAA
CATGTTGCTAATATATATGAGCATATGATAAAATCAAATAGGAATCCTTTTCCGAATAGC
TACTTAATCATTTAAACTATTATT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAATTTGTACAAACACAATCCCTACCCATGACGGAGACCACAGTGTTCCCTTCCATCGTC
CGCAGGCTGTCAATGGAATTTCCTGGTACAAAACAAACAACTTAGTTCTTGATTACTGCA
CTAGTTTGGTGGCAAGTGATTGTTTCTTGGTGTTTGACGATGGTAGGCAGATCCCATATA
AGAACTATCGACAGGCGGGAGGGGACTACGCCACGTGGAGCATCACCCCAGACACATCCG
CCCAGCCATACTGGAAATGGTTTGTCTGCCACTTCAGATCAAAACTTGAAGAAAAATATC
AAAAGAGATTTATAGATAAAGGTAAAATTCCTGATGCATGGGAAAAAATCACAAAACAGA
ATGTGCTTGATGACTTGAAATAAAACTAATACTCAACACCCAAAAGAGAGCCCCGGGATC
TGAATAAAAGAGGCACCTTAACTGACCAAGGCGAAAATACCACCTCCTCATCATGAAAAC
CTTCATTGTACCTATTTTTCAAATGAAACATCTGAAACTAAATCAATTAACAAGAAGAAG
TTGAAGATTTGCTCTGAAAGGATTTCATTTCCTTTGTCTCAATTCCTTCTGGTTTAAAAA
CATGTTGCTAATATATATGAGCATATGATAAAATCAAATAGGAATCCTTTTCCGAATAGC
TACTTAATCATTTAAACTATTATT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61863256|ref|XP_605460.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61863256|ref|XP_605460.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               321-440, - strand, RNAz p=0.989206

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               321-440, - strand, RNAz p=0.989206

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-641, gnl|bosTau2|chr15 (28997156-28996514)
               

               
               1-641, gnl|Mm7|chr7 (101881032-101880462)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-641, gnl|bosTau2|chr15 (28997156-28996514)
               

               
               1-641, gnl|Mm7|chr7 (101881032-101880462)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               csk (0.281492)
               

               
               sin (0.174948)
               

               
               lin (0.145603)
               

               
               spl (0.143184)
               

               
               cbl (0.114797)
               

               
               jej (0.0989218)

Expressed library(ies): 6 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               csk (0.281492)
               

               
               sin (0.174948)
               

               
               lin (0.145603)
               

               
               spl (0.143184)
               

               
               cbl (0.114797)
               

               
               jej (0.0989218)

	1-641, gnl\|bosTau2\|chr15 (28997156-28996514)
	1-641, gnl\|Mm7\|chr7 (101881032-101880462)

	csk (0.281492)
	sin (0.174948)
	lin (0.145603)
	spl (0.143184)
	cbl (0.114797)
	jej (0.0989218)