Ss1.1-rlin39_i5.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ATCTATTCTACTTGCACAGAGCTGGATGCCCCGAGAAACAGTGATATTTGCCTCAGATGT AAGAATAAGTTTTGACAAATTTCGGAACTGCATGACAGCAACTGTAATCTCAAAAACCAT TATTACAACAAATCCAGATACACCAGAAGCTAACATCCTATTGCATTTTATAAGAGAAAA TAAAGAAACAAATCCTCTGGATGATGAAATTGGCAGTTGTTTGAAAGAATCCATAAATTT AAGTACAATAGATGATGTCTATACAGTTGAACAATTAAAAGTAAAAGCTTTGAAGAATGA GGGAAAAGCCGATCCTTTCTATGGAATTCTTTATGCCTACATTTCTGCACTGAACATTGA TGATGAAACCACAAAAGTAGTTCGAAGTAAATGCTCAGGCTGTGGTTCCATTGTAAATGA AGCGTCCAGCATTTGTACCACTTGCAACAGAGATTCTTCAGAATTTAAATCTGCTTTTCT CAGCTTTGACATGCTAATTGACCTTAGCGACCACACAGGCACTCTCCATTTCTGTAGTCT CACAGGAAGTGTTGCTGAGGAGACTTTGGGCTGCACGGTAAATGAGTTTCTCGCAATGAC GGATGAACAGAGAACGGCATTGAAGTGGCAACTTCTTTTGGAAAGGACCAAAATTTACTT AAAAGTCTCTCTGTTGCATAGGGCAAGGGCCAGACTGAGGATGAGTGTACTCTCGTGTAA GCTGGCAGATCCCGTTGAGGCAAGTAGGAGCTTGTCTGGATGAGGAAGTATTTAAAAGCA GATACCATTTTGAACTCTAGAAGAGAATACGAGTTTTAACCACCTTTAAAGTAGAAAATG AGTTTGAAAATTATGGATTAAAATTGTATTTTGTTCAAATGTGGTGAGAATGTTTCTATC AGTTGTTATGTTCTTTCCCCCTAGAGATGGTTTGGGATAAATCCTAAAATCTCCCTCTTA ATCAAGCTCATTCCTTAGAAGGCCTTTTCTACTGGCTTGGCCCTCTGTCTTTCCAAGTTG AAAATGTTTCTATGAATCAATAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ATCTATTCTACTTGCACAGAGCTGGATGCCCCGAGAAACAGTGATATTTGCCTCAGATGT AAGAATAAGTTTTGACAAATTTCGGAACTGCATGACAGCAACTGTAATCTCAAAAACCAT TATTACAACAAATCCAGATACACCAGAAGCTAACATCCTATTGCATTTTATAAGAGAAAA TAAAGAAACAAATCCTCTGGATGATGAAATTGGCAGTTGTTTGAAAGAATCCATAAATTT AAGTACAATAGATGATGTCTATACAGTTGAACAATTAAAAGTAAAAGCTTTGAAGAATGA GGGAAAAGCCGATCCTTTCTATGGAATTCTTTATGCCTACATTTCTGCACTGAACATTGA TGATGAAACCACAAAAGTAGTTCGAAGTAAATGCTCAGGCTGTGGTTCCATTGTAAATGA AGCGTCCAGCATTTGTACCACTTGCAACAGAGATTCTTCAGAATTTAAATCTGCTTTTCT CAGCTTTGACATGCTAATTGACCTTAGCGACCACACAGGCACTCTCCATTTCTGTAGTCT CACAGGAAGTGTTGCTGAGGAGACTTTGGGCTGCACGGTAAATGAGTTTCTCGCAATGAC GGATGAACAGAGAACGGCATTGAAGTGGCAACTTCTTTTGGAAAGGACCAAAATTTACTT AAAAGTCTCTCTGTTGCATAGGGCAAGGGCCAGACTGAGGATGAGTGTACTCTCGTGTAA GCTGGCAGATCCCGTTGAGGCAAGTAGGAGCTTGTCTGGATGAGGAAGTATTTAAAAGCA GATACCATTTTGAACTCTAGAAGAGAATACGAGTTTTAACCACCTTTAAAGTAGAAAATG AGTTTGAAAATTATGGATTAAAATTGTATTTTGTTCAAATGTGGTGAGAATGTTTCTATC AGTTGTTATGTTCTTTCCCCCTAGAGATGGTTTGGGATAAATCCTAAAATCTCCCTCTTA ATCAAGCTCATTCCTTAGAAGGCCTTTTCTACTGGCTTGGCCCTCTGTCTTTCCAAGTTG AAAATGTTTCTATGAATCAATAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
| 36-140, gnl|bosTau2|chr25 (3183353-3183457) | |
| 36-140, gnl|canFam2|chr6 (42103554-42103347) | |
| 36-140, gnl|danRer3|chr12 (13383993-13383837) | |
| 36-140, gnl|dasNov1|scaffold_59758 (12685-12490) | |
| 36-140, gnl|echTel1|scaffold_175350 (5972-5786) | |
| 36-140, gnl|fr1|chrUn (64968039-64967882) | |
| 36-140, gnl|galGal2|chr14 (8096358-8096555) | |
| 36-140, gnl|hg17|chr16 (1843017-1843209) | |
| 36-140, gnl|Hg17|chr16 (1843142-1843038) | |
| 36-140, gnl|loxAfr1|scaffold_14801 (56062-55868) | |
| 36-140, gnl|mm7|chr17 (23011861-23011671) | |
| 36-140, gnl|Mm7|chr17 (23011737-23011841) | |
| 36-140, gnl|monDom2|scaffold_5 (121875413-121875204) | |
| 36-140, gnl|oryCun1|scaffold_156410 (3733-3539) | |
| 36-140, gnl|panTro1|chr18_random (6767271-6767078) | |
| 36-140, gnl|rheMac2|chr20 (1843556-1843750) | |
| 36-140, gnl|rn3|chr10 (14081370-14081180) | |
| 36-140, gnl|tetNig1|chr2 (3608253-3608410) | |
| 36-140, gnl|xenTro1|scaffold_142 (1791757-1791997) | |
| 395-583, gnl|bosTau2|chr25 (3193420-3193608) | |
| 395-583, gnl|Hg17|chr16 (1829439-1829251) | |
| 395-583, gnl|Mm7|chr17 (23017646-23017834) | |
| 676-1044, gnl|bosTau2|chr25 (3196900-3197268) | |
| 676-1044, gnl|Hg17|chr16 (1824357-1824004) | |
| 676-1044, gnl|Mm7|chr17 (23022091-23022421) |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 36-140, gnl|bosTau2|chr25 (3183353-3183457) | |
| 36-140, gnl|canFam2|chr6 (42103554-42103347) | |
| 36-140, gnl|danRer3|chr12 (13383993-13383837) | |
| 36-140, gnl|dasNov1|scaffold_59758 (12685-12490) | |
| 36-140, gnl|echTel1|scaffold_175350 (5972-5786) | |
| 36-140, gnl|fr1|chrUn (64968039-64967882) | |
| 36-140, gnl|galGal2|chr14 (8096358-8096555) | |
| 36-140, gnl|hg17|chr16 (1843017-1843209) | |
| 36-140, gnl|Hg17|chr16 (1843142-1843038) | |
| 36-140, gnl|loxAfr1|scaffold_14801 (56062-55868) | |
| 36-140, gnl|mm7|chr17 (23011861-23011671) | |
| 36-140, gnl|Mm7|chr17 (23011737-23011841) | |
| 36-140, gnl|monDom2|scaffold_5 (121875413-121875204) | |
| 36-140, gnl|oryCun1|scaffold_156410 (3733-3539) | |
| 36-140, gnl|panTro1|chr18_random (6767271-6767078) | |
| 36-140, gnl|rheMac2|chr20 (1843556-1843750) | |
| 36-140, gnl|rn3|chr10 (14081370-14081180) | |
| 36-140, gnl|tetNig1|chr2 (3608253-3608410) | |
| 36-140, gnl|xenTro1|scaffold_142 (1791757-1791997) | |
| 395-583, gnl|bosTau2|chr25 (3193420-3193608) | |
| 395-583, gnl|Hg17|chr16 (1829439-1829251) | |
| 395-583, gnl|Mm7|chr17 (23017646-23017834) | |
| 676-1044, gnl|bosTau2|chr25 (3196900-3197268) | |
| 676-1044, gnl|Hg17|chr16 (1824357-1824004) | |
| 676-1044, gnl|Mm7|chr17 (23022091-23022421) |
| Expressed library(ies): 15 entry(ies) | More info |
| Expressed library(ies): 15 entry(ies) | Help | Less info |
| cte (0.87822) | |
| lin (0.436808) | |
| amn (0.417711) | |
| ski (0.29347) | |
| ret (0.257467) | |
| tra (0.246184) | |
| col (0.195008) | |
| nep (0.183925) | |
| fbs (0.175346) | |
| lun (0.150489) | |
| nca (0.136874) | |
| sug (0.127291) | |
| med (0.116252) | |
| spc (0.113366) | |
| eje (0.0988338) |
| Expressed library(ies): 15 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cte (0.87822) | |
| lin (0.436808) | |
| amn (0.417711) | |
| ski (0.29347) | |
| ret (0.257467) | |
| tra (0.246184) | |
| col (0.195008) | |
| nep (0.183925) | |
| fbs (0.175346) | |
| lun (0.150489) | |
| nca (0.136874) | |
| sug (0.127291) | |
| med (0.116252) | |
| spc (0.113366) | |
| eje (0.0988338) |